Problem finding TPO dependency file

[John Ling]

Hello,

Using automake 1.9.1 and higher, I get the following error below.  I do 
not get this error if I switch to automake 1.8.5.  So what is the change 
between 1.8.5 and 1.9.1 that causes it to be unable to generate this TPO 
file?  What do I have to do to resolve this problem?

shared/cpp/src/fasta/Fasta.cpp:192: fatal error: opening dependency file 
shared/cpp/src/fasta/.deps/Fasta.Tpo: No such file or directory
compilation terminated.
make[1]: *** [shared/cpp/src/fasta/Fasta.lo] Error 1
make[1]: Leaving directory `/space1/home/jling/atlas2/ubic'
make: *** [all-recursive] Error 1

Thanks,
John Ling