bug#34934: closed (deeptools is not reproducible)

[GNU bug Tracking System]

Your message dated Wed, 13 Jan 2021 10:54:59 -0500
with message-id <87lfcwn86k.fsf@gmail.com>
and subject line Re: bug#34934: deeptools is not reproducible
has caused the debbugs.gnu.org bug report #34934,
regarding deeptools is not reproducible
to be marked as done.

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help-debbugs@gnu.org.)


-- 
34934: http://debbugs.gnu.org/cgi/bugreport.cgi?bug=34934
GNU Bug Tracking System
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> --- Begin Message ---
>
>
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> Subject: 
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> deeptools is not reproducible
>
>
>
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> Date: 
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> Wed, 20 Mar 2019 23:01:32 -0400
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> On current master (commit af184b68e78aa51b6ff50b7327dfbbdb1d6e6843),
> deeptools does not build reproducibly:
>
> $ guix build --check --no-grafts deeptools
>
> --8<---------------cut here---------------start------------->8---
> ...
> guix build: error: derivation 
> `/gnu/store/hky07zjsvai0x3n99lqmgyh6rhld6v4s-deeptools-3.1.3.drv' may not be 
> deterministic: output 
> `/gnu/store/0j8200f20mp5grjkjh5kw2q9a67gw3rn-deeptools-3.1.3' differs
> --8<---------------cut here---------------end--------------->8---
>
> $ diff -ru "$(guix build deeptools)" 
> /gnu/store/0j8200f20mp5grjkjh5kw2q9a67gw3rn-deeptools-3.1.3
>
> --8<---------------cut here---------------start------------->8---
> │ │ │ │ ├── tree.cpython-37m-x86_64-linux-gnu.so
> │ │ │ │ │ ├── 
> /gnu/store/02iklp4swqs0ipxhg5x9b2shmj6b30h1-binutils-2.31.1/bin/readelf --wide 
> --dynamic {}
> │ │ │ │ │ │ @@ -2,15 +2,15 @@
> │ │ │ │ │ │  Dynamic section at offset 0xcd90 contains 30 entries:
> │ │ │ │ │ │    Tag        Type                         Name/Value
> │ │ │ │ │ │   0x0000000000000001 (NEEDED)             Shared library: 
> [libz.so.1]
> │ │ │ │ │ │   0x0000000000000001 (NEEDED)             Shared library: 
> [libpython3.7m.so.1.0]
> │ │ │ │ │ │   0x0000000000000001 (NEEDED)             Shared library: 
> [libgcc_s.so.1]
> │ │ │ │ │ │   0x0000000000000001 (NEEDED)             Shared library: 
> [libpthread.so.0]
> │ │ │ │ │ │   0x0000000000000001 (NEEDED)             Shared library: 
> [libc.so.6]
> │ │ │ │ │ │ - 0x000000000000001d (RUNPATH)            Library runpath: 
> [/gnu/store/9z98cvjm7p7z21xdid1ryydxy5vyz6wr-python-3.7.0/lib:/gnu/store/h90vnqw0nwd0hhm1l5dgxsdrigddfmq4-glibc-2.28/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib:/gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/../../..]
> │ │ │ │ │ │ + 0x000000000000001d (RUNPATH)            Library runpath:
> [/gnu/store/b7fqhszxl02g6pfm3vw6b3cjz472qrly-python-3.7.0/lib:/gnu/store/h90vnqw0nwd0hhm1l5dgxsdrigddfmq4-glibc-2.28/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib:/gnu/store/nq4lsyipmfb0q7g26ra45rwwqrh3x8zw-zlib-1.2.11/lib:/gnu/store/4sqps8dczv3g7rwbdibfz6rf5jlk7w90-gcc-5.5.0-lib/lib/gcc/x86_64-unknown-linux-gnu/5.5.0/../../..]
> --8<---------------cut here---------------end--------------->8---
>
> There are multiple more instances of differences in the two versions.
>
> Maybe something to do with two flavors of Python being used?
>
> $ guix refresh --list-transitive deeptools | tr ' ' '\n' | grep -E 
> 'python-(minimal|wrapper)|python2?@'
> python@3.7.0
> python@3.7.0
> python-wrapper@3.7.0
> python-minimal@3.7.0
> python-minimal-wrapper@3.7.0
> python2@2.7.15
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
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> Re: bug#34934: deeptools is not reproducible
>
>
>
>
> Date: 
>
> Wed, 13 Jan 2021 10:54:59 -0500
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>
>
> User-agent: 
>
> Gnus/5.13 (Gnus v5.13) Emacs/27.1 (gnu/linux)
>
>
>
>
> This is no longer an issue.
>
> Closing.
>
> Maxim
>
>
> --- End Message ---