bug#57136: closed (Snakemake cannot execute remote jobs)

[GNU bug Tracking System]

Your message dated Mon, 29 Aug 2022 18:50:41 +0200
with message-id <m1fshfdme6.fsf@fastmail.net>
and subject line Re: Snakemake cannot execute remote jobs
has caused the debbugs.gnu.org bug report #57136,
regarding Snakemake cannot execute remote jobs
to be marked as done.

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-- 
57136: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57136
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> --- Begin Message ---
>
>
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> Subject: 
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> Snakemake cannot execute remote jobs
>
>
>
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> Date: 
>
> Thu, 11 Aug 2022 10:39:56 +0200
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>
>
>
> The execution of Snakemake workflows fails on a cluster because the
> script that Snakemake executes remotely does not reference Python
> correctly.
>
> This is due to a patch applied in the Guix package
> definition (build phase call-wrapper-not-wrapped-snakemake, 
> https://git.savannah.gnu.org/cgit/guix.git/tree/gnu/packages/python-xyz.scm#n9713)
> which is outdated. The corresponding code in Snakemake was changed
> significantly in the following commit:
>
>   
> https://github.com/snakemake/snakemake/commit/e87cc979bea0567e1cd97722d385f472857df83c#diff-438f3317205fd7130727d0589d2fc1a6c2e1f6fc48c2c04d354a8a09b91ba2f4
>
> Cheers,
>   Konrad
>
>
>
> --- End Message ---
> --- Begin Message ---
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>
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> Subject: 
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> Re: Snakemake cannot execute remote jobs
>
>
>
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> Date: 
>
> Mon, 29 Aug 2022 18:50:41 +0200
>
>
>
>
> The bug is fixed via the patch referenced above in commit 
> 5831155175614726685edab7efa60ce48e4da1f5.
>
>
> --- End Message ---