bug#57485: closed ([PATCH] gnu: r-dyngen: Update to 1.0.4.)

[GNU bug Tracking System]

Your message dated Tue, 30 Aug 2022 22:58:13 +0200
with message-id <874jxtv3uo.fsf@elephly.net>
and subject line Re: [bug#57485] [PATCH] gnu: r-dyngen: Update to 1.0.4.
has caused the debbugs.gnu.org bug report #57485,
regarding [PATCH] gnu: r-dyngen: Update to 1.0.4.
to be marked as done.

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-- 
57485: https://debbugs.gnu.org/cgi/bugreport.cgi?bug=57485
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> --- Begin Message ---
>
>
>
> Subject: 
>
> [PATCH] gnu: r-dyngen: Update to 1.0.4.
>
>
>
>
> Date: 
>
> Tue, 30 Aug 2022 12:44:31 +0200
>
>
>
>
> * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
> [source]: Change to cran-uri source.
> ---
>  gnu/packages/bioinformatics.scm | 76 ++++++++++++++++-----------------
>  1 file changed, 36 insertions(+), 40 deletions(-)
>
> diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
> index 2bae609614..89e5dd645f 100644
> --- a/gnu/packages/bioinformatics.scm
> +++ b/gnu/packages/bioinformatics.scm
> @@ -11592,47 +11592,43 @@ (define-public biobambam2
>      (license license:gpl3+)))
>  
>  (define-public r-dyngen
> -  (let ((commit "37fd1798fcbd41093fb3d7775bb2d268e2fc82b6")
> -        (revision "1"))
> -    (package
> -      (name "r-dyngen")
> -      (version (git-version "1.0.3" revision commit))
> -      (source
> -       (origin
> -         (method git-fetch)
> -         (uri (git-reference
> -               (url "https://github.com/dynverse/dyngen";)
> -               (commit commit)))
> -         (file-name (git-file-name name version))
> -         (sha256
> -          (base32 "05pr6v1b8yji1jnj3fwx0crmg8ay6yy6lp9qjmcyvhkwbmf3kvc7"))))
> -      (properties `((upstream-name . "dyngen")))
> -      (build-system r-build-system)
> -      (propagated-inputs
> -       (list r-assertthat
> -             r-dplyr
> -             r-dynutils
> -             r-ggplot2
> -             r-ggraph
> -             r-ggrepel
> -             r-gillespiessa2
> -             r-igraph
> -             r-lmds
> -             r-matrix
> -             r-patchwork
> -             r-pbapply
> -             r-purrr
> -             r-rlang
> -             r-tibble
> -             r-tidygraph
> -             r-tidyr
> -             r-viridis))
> -      (home-page "https://github.com/dynverse/dyngen";)
> -      (synopsis "Multi-Modal simulator for single-cell omics analyses")
> -      (description
> -       "This package provides a multi-modal simulation engine for studying
> +  (package
> +    (name "r-dyngen")
> +    (version "1.0.4")
> +    (source
> +     (origin
> +       (method url-fetch)
> +       (uri (cran-uri "dyngen" version))
> +       (sha256
> +        (base32
> +         "1qmqy0dyiz30zpf3ii4h2ip6hg2449ghb474sjzrqa1yk9mdpy4i"))))
> +    (properties `((upstream-name . "dyngen")))
> +    (build-system r-build-system)
> +    (propagated-inputs
> +     (list r-assertthat
> +           r-dplyr
> +           r-dynutils
> +           r-ggplot2
> +           r-ggraph
> +           r-ggrepel
> +           r-gillespiessa2
> +           r-igraph
> +           r-lmds
> +           r-matrix
> +           r-patchwork
> +           r-pbapply
> +           r-purrr
> +           r-rlang
> +           r-tibble
> +           r-tidygraph
> +           r-tidyr
> +           r-viridis))
> +    (home-page "https://github.com/dynverse/dyngen";)
> +    (synopsis "Multi-Modal simulator for single-cell omics analyses")
> +    (description
> +     "This package provides a multi-modal simulation engine for studying
>  dynamic cellular processes at single-cell resolution.")
> -      (license license:expat))))
> +    (license license:expat)))
>  
>  ;; Needed for r-liana
>  (define-public r-omnipathr/devel
>
> base-commit: 47c11772dfe840a536ed7ec438fe832878f51054
> -- 
> 2.37.2
>
>
>
>
> --- End Message ---
> --- Begin Message ---
>
>
>
> Subject: 
>
> Re: [bug#57485] [PATCH] gnu: r-dyngen: Update to 1.0.4.
>
>
>
>
> Date: 
>
> Tue, 30 Aug 2022 22:58:13 +0200
>
>
>
>
> User-agent: 
>
> mu4e 1.8.7; emacs 28.1
>
>
>
>
> Mădălin Ionel Patrașcu <madalinionel.patrascu@mdc-berlin.de> writes:
>
> > * gnu/packages/bioinformatics.scm (r-dyngnen): Update to 1.0.4.
> > [source]: Change to cran-uri source.
>
> Applied, thanks!
>
> -- 
> Ricardo
>
>
> --- End Message ---