Re: [O] Updating the Babel section of Worg

[Eric Schulte]

Martyn Jago <address@hidden> writes:

> Hi Thomas and Eric
>
> Love it. I will try to help!
>
> Worg is a great resource that is getting better and better.
>
> The template looks good (Babel wise) and should be up there as a
> check-sheet, although maybe not as a requirement.
>

I agree, I've just linked to it from the languages page [1] with the
following statement.  Please feel free to edit this directly on worg if
it sounds too strong.

    Note: Many languages in this table still require documentation. A
    template is provided in the worg git repository for the addition of
    language documentation.

>
> Eric - perhaps mark good pages as good rather than bad pages. They're
> not necessarily bad?
>

I agree, I don't think any of the pages are "bad".  Rather some pages
simply need to be updated to use the new standard syntax.  In this case
I would find it better to simply flag those pages which need to be
updated, rather than litter all pages with tags.

>
> It would be cool to say [Tested 2 days ago] at the top of the page
> (in a nice green) or something like that. (or validation link in green /
> yellow / red)
>

I see you point, but the plan is that after this falls syntax
standardization we should not be making any breaking changes moving
forward, so a page from Dec 2011 should be as valid as a page from Jan
2013.

>
> I also think that [Under development] should be removed from
> index.html. Worg is always under development, that's what it is?
>

I agree.

>
> For anybody that is not that familiar with Worg, you can contribute to
> it right now - it's pure community.
>
                         ^
              well said! |

Cheers,

>
>  Best, Martyn
>
> address@hidden (Thomas S. Dye) writes:
>
>> Hi Eric,
>>
>> I've attached a first draft of a template for review and revision.  It
>> is heavily influenced by John Hendy's terrific gnuplot page.  I
>> believe it incorporates the points in your outline.  Feel free to
>> edit as appropriate.
>>
>> All the best,
>> Tom
>>
>>
>> #+OPTIONS:    H:3 num:nil toc:2 \n:nil @:t ::t |:t ^:{} -:t f:t *:t TeX:t 
>> LaTeX:t skip:nil d:(HIDE) tags:not-in-toc
>> #+STARTUP:    align fold nodlcheck hidestars oddeven lognotestate hideblocks
>> #+SEQ_TODO:   TODO(t) INPROGRESS(i) WAITING(w@) | DONE(d) CANCELED(c@)
>> #+TAGS:       Write(w) Update(u) Fix(f) Check(c) noexport(n)
>> #+TITLE:      Language Source Code Blocks in Org Mode
>> #+AUTHOR:     Your name
>> #+EMAIL:      you[at]email[dot]org
>> #+LANGUAGE:   en
>> #+STYLE:      <style type="text/css">#outline-container-introduction{ 
>> clear:both; }</style>
>> #+LINK_UP:    ../languages.php
>> #+LINK_HOME:  http://orgmode.org/worg/
>> #+EXPORT_EXCLUDE_TAGS: noexport
>>
>> #+name: banner
>> #+begin_html
>>   <div id="subtitle" style="float: center; text-align: center;">
>>   <p>
>>   Org Mode support for <a href="http://language-site/";>Language</a>
>>   </p>
>>   <p>
>>   <a href="http://language-site/";>
>>   <img src="http://language-site/graphic.file"/>
>>   </a>
>>   </p>
>>   </div>
>> #+end_html
>>
>> * Template Checklist [0/13]                                        :noexport:
>>   - [ ] Revise #+TITLE:
>>   - [ ] Indicate #+AUTHOR:
>>   - [ ] Add #+EMAIL:
>>   - [ ] Revise banner source block [0/3]
>>     - [ ] Add link to a useful language web site
>>     - [ ] Replace "Language" with language name
>>     - [ ] Find a suitable graphic and use it to link to the language
>>       web site
>>   - [ ] Write an [[Introduction]]
>>   - [ ] Describe [[Requirements%20and%20Setup][Requirements and Setup]]
>>   - [ ] Replace "Language" with language name in 
>> [[Org%20Mode%20Features%20for%20Language%20Source%20Code%20Blocks][Org Mode 
>> Features for Language Source Code Blocks]]
>>   - [ ] Specify [[Org%20Mode%20Configuration][Org Mode Configuration]]
>>   - [ ] Describe [[Header%20Arguments][Header Arguments]]
>>   - [ ] Describe support for [[Sessions]]
>>   - [ ] Describe [[Result%20Types][Result Types]]
>>   - [ ] Describe [[Other]] differences from supported languages
>>   - [ ] Provide brief [[Examples%20of%20Use][Examples of Use]]
>> * Introduction
>>   - Brief description of language.
>>   - Range of typical uses within Org Mode.
>>   - Link to this Org Mode file.
>> * Requirements and Setup
>>   - Installation and configuration of language software
>>   - Emacs configuration
>> * Org Mode Features for Language Source Code Blocks
>> ** Org Mode Configuration
>>    - org-babel-do-load-languages
>> ** Header Arguments
>>    - Language-specific default values
>>    - Language-specific header arguments
>> ** Sessions
>>    - Support or not
>>    - Typical use for sessions
>> ** Result Types
>>    - Which result types are supported?
>> ** Other
>>    - Differences from other supported languages
>> * Examples of Use
>>   - Hello World!
>>   - Common uses
>>   - Links to tutorials and other resources
>>
>>
>> Eric Schulte <address@hidden> writes:
>>
>>> Hi Tom,
>>>
>>> address@hidden (Thomas S. Dye) writes:
>>>
>>>> Hi Eric,
>>>>
>>>> Yes, this is overdue.  I think your plan is a good one.
>>>>
>>>> Perhaps a few of the individual use cases could be moved to FIXME,
>>>> instead?  I'm thinking here of Feiming Chen's R setup and some of my
>>>> contributions when I was experimenting writing LaTeX inside source
>>>> code blocks.  The authors could resurrect these as they see fit.
>>>>
>>>
>>> I don't know what FIXME is, but if there is a way to keep the page in
>>> the worg git repository but remove it from the exported HTML then that
>>> sounds ideal.
>>>
>>>>
>>>> Hopefully, others will contribute use examples.  My sense from reading
>>>> the list is there are many interesting ones.
>>>>
>>>> I'd like it if Org mode users designed a template for the language
>>>> specific pages.  Currently, these seem to me a mixed bag and it would be
>>>> good to regularize them.
>>>
>>> The below is a modified version of a template which can be found in a
>>> couple of the existing language tutorials, I think it serves as a good
>>> starting point.
>>>
>>> - Install and Setup
>>>   - Instillation and configuration of software (e.g., the language itself)
>>>   - Configuration of Emacs (e.g., activate language, set command path)
>>> - Examples
>>>   - Common ways to use the language in an Org-mode document
>>> - Special cases
>>>   - are there any language-specific header arguments
>>>   - does the language support session evaluation
>>>   - does the language support all result types
>>>   - is the language different from most babel languages
>>>     (e.g., C is compiled before execution, ditaa returns files, etc...)
>>>
>>>> It would also be nice to have one for each of the supported languages.
>>>> There are 11 language specific pages now, which leaves quite a few
>>>> languages under-documented.
>>>
>>> (length org-babel-load-languages) ;; => 27
>>>
>>> ls org-contrib/babel/languages/ob-doc-*|wc -l # => 11
>>>
>>> It looks like we have at least 16 more to go before we hit full language
>>> coverage.  Perhaps we should use the empty cells in the "documentation"
>>> column in the languages table at [1] as a sign up space for volunteers
>>> who would be willing to write a brief tutorial demonstrating usage of
>>> Org-mode with their favorite language.
>>>
>>> Moving forward this is likely something we could request of the
>>> contributors of new languages.
>>>
>>> Also, once the template above is finalized it should be posted on worg
>>> and linked to through the languages page.
>>>
>>>>
>>>> I'll be happy to work on this as I can.
>>>>
>>>
>>> Great, I don't anticipate having time to put towards this, although I'll
>>> be happy to help troubleshoot where I can.
>>>
>>> Cheers,
>>>
>>>>
>>>> All the best,
>>>> Tom
>>>>
>>>>
>>>> Eric Schulte <address@hidden> writes:
>>>>
>>>>> Thanks for raising this point.  The bulk of the content in the Babel
>>>>> portion of worg is fairly old, predating the syntax standardization
>>>>> efforts this fall.  I've just pushed some minor updates to the main
>>>>> babel pages, but updating the language-specific tutorials and the
>>>>> individual use cases will be a much larger effort.
>>>>>
>>>>> I'm not sure how to proceed.  One option would be to go through and add
>>>>> a [uses deprecated syntax] tag to the top of each such page, which could
>>>>> be removed after the page has been checked and possibly updated to
>>>>> ensure consistency with the latest syntax.
>>>>>
>>>>> Given that the Babel syntax will not be changing significantly moving
>>>>> forward now would be a good time to do such a review.  Ideally this
>>>>> could be completed before the release of Emacs 24 in a couple of months.
>>>>>
>>>>> Any other ideas for update/reorganization or volunteers?
>>>>>
>>>>> Cheers,
>>>>>
>>>>> address@hidden (Thomas S. Dye) writes:
>>>>>
>>>>>> Hi Riccardo,
>>>>>>
>>>>>> Thanks for the URL.  Org mode has evolved since this article was
>>>>>> written.  It should probably be revised or taken off Worg.  I've copied
>>>>>> Eric Schulte, who is better able than me to determine the correct course
>>>>>> of action here.
>>>>>>
>>>>>> In the meantime, an up-to-date description of how Org mode can be used
>>>>>> to write literate programs has appeared in the Journal of Statistical
>>>>>> Software.  You can find it here: http://www.jstatsoft.org/v46/i03
>>>>>>
>>>>>> Perhaps you could use the examples in the JSS article to get started?
>>>>>> If these don't work for you, or if they raise questions that are 
>>>>>> difficult
>>>>>> to answer, please do come back to the list with your queries.
>>>>>>
>>>>>> All the best,
>>>>>> Tom
>>>>>>
>>>>>> Riccardo Romoli <address@hidden> writes:
>>>>>>
>>>>>>> Hi, this is the URL:
>>>>>>>
>>>>>>> http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.html
>>>>>>>
>>>>>>> Best
>>>>>>> R
>>>>>>>
>>>>>>> 2012/2/5 Thomas S. Dye <address@hidden>
>>>>>>>
>>>>>>>> Hi Riccardo,
>>>>>>>>
>>>>>>>> This code appears to be outdated.  I don't recall this code on the org
>>>>>>>> site.  Could you send a URL?
>>>>>>>>
>>>>>>>> All the best,
>>>>>>>> Tom
>>>>>>>>
>>>>>>>> Riccardo Romoli <address@hidden> writes:
>>>>>>>>
>>>>>>>> > Hi, I'm trying to generate some figure with R, into an org session.
>>>>>>>> Firstly
>>>>>>>> > I use the code in the org site. The problem is that the code do not
>>>>>>>> > generate any figure.
>>>>>>>> >
>>>>>>>> > This is the code:
>>>>>>>> >
>>>>>>>> > #+TITLE:Test
>>>>>>>> > #+AUTHOR: Your Name
>>>>>>>> > #+EMAIL: address@hidden
>>>>>>>> > #+BABEL: :session *R* :cache yes :results output graphics :exports
>>>>>>>> > both :tangle yes
>>>>>>>> >
>>>>>>>> > * Example of Org-Babel for R Literate Programming
>>>>>>>> > ** R text output
>>>>>>>> > A simple summary.
>>>>>>>> > #+begin_src R
>>>>>>>> >   x <- rnorm(10)
>>>>>>>> >   summary(x)
>>>>>>>> > #+end_src
>>>>>>>> >
>>>>>>>> > ** R graphics output
>>>>>>>> > Note we use the object =x= generated in previous code block, thanks 
>>>>>>>> > to
>>>>>>>> > the header option =:session *R*=.  The output graphics file is
>>>>>>>> > =a.png=.
>>>>>>>> >
>>>>>>>> > #+begin_src R  :file a.png
>>>>>>>> >   y <- rnorm(10)
>>>>>>>> >   plot(x, y)
>>>>>>>> > #+end_src
>>>>>>>> >
>>>>>>>> > Same plot with larger dimension:
>>>>>>>> >
>>>>>>>> > #+begin_src R  :file b.png :width 800 :height 800
>>>>>>>> >   plot(x, y)
>>>>>>>> > #+end_src
>>>>>>>> >
>>>>>>>> >
>>>>>>>> > Where do I wrong?
>>>>>>>> >
>>>>>>>> > Best
>>>>>>>> > Riccardo
>>>>>>>> > Hi, I&#39;m trying to generate some figure with R, into an org 
>>>>>>>> > session.
>>>>>>>> Firstly I use the code in the org site. The problem is that the code 
>>>>>>>> do not
>>>>>>>> generate any figure. This is the code:
>>>>>>>> > #+TITLE:Test
>>>>>>>> > #+AUTHOR: Your Name
>>>>>>>> > #+EMAIL: mailto:address@hidden
>>>>>>>> > #+BABEL: :session *R* :cache yes :results output graphics :exports 
>>>>>>>> > both
>>>>>>>> :tangle yes
>>>>>>>> >
>>>>>>>> > * Example of Org-Babel for R Literate Programming
>>>>>>>> > ** R text output
>>>>>>>> > A simple summary.
>>>>>>>> > #+begin_src R
>>>>>>>> >   x <- rnorm(10)
>>>>>>>> >   summary(x)
>>>>>>>> > #+end_src
>>>>>>>> >
>>>>>>>> > ** R graphics output
>>>>>>>> > Note we use the object =x= generated in previous code block, thanks 
>>>>>>>> > to
>>>>>>>> > the header option =:session *R*=.  The output graphics file is
>>>>>>>> > =a.png=.
>>>>>>>> >
>>>>>>>> > #+begin_src R  :file a.png
>>>>>>>> >   y <- rnorm(10)
>>>>>>>> >   plot(x, y)
>>>>>>>> > #+end_src
>>>>>>>> >
>>>>>>>> > Same plot with larger dimension:
>>>>>>>> >
>>>>>>>> > #+begin_src R  :file b.png :width 800 :height 800
>>>>>>>> >   plot(x, y)
>>>>>>>> > #+end_src
>>>>>>>> > Where do I wrong?BestRiccardo
>>>>>>>>
>>>>>>>> --
>>>>>>>> Thomas S. Dye
>>>>>>>> http://www.tsdye.com
>>>>>>>>
>>>>>>> Hi, this is the
>>>>>>> URL:http://orgmode.org/worg/org-contrib/babel/how-to-use-Org-Babel-for-R.htmlBestR
>>>>>>> 2012/2/5 Thomas S. Dye <span dir="ltr"><mailto:address@hidden></span>Hi 
>>>>>>> Riccardo,
>>>>>>>
>>>>>>>
>>>>>>> This code appears to be outdated.  I don&#39;t recall this code on the 
>>>>>>> org
>>>>>>> site.  Could you send a URL?
>>>>>>>
>>>>>>> All the best,
>>>>>>> Tom
>>>>>>>
>>>>>>> Riccardo Romoli <mailto:address@hidden> writes:
>>>>>>>
>>>>>>>> Hi, I&#39;m trying to generate some figure with R, into an org 
>>>>>>>> session. Firstly
>>>>>>>> I use the code in the org site. The problem is that the code do not
>>>>>>>> generate any figure.
>>>>>>>>
>>>>>>>> This is the code:
>>>>>>>>
>>>>>>>> #+TITLE:Test
>>>>>>>> #+AUTHOR: Your Name
>>>>>>>> #+EMAIL: mailto:address@hidden
>>>>>>>> #+BABEL: :session *R* :cache yes :results output graphics :exports
>>>>>>>> both :tangle yes
>>>>>>>>
>>>>>>>> * Example of Org-Babel for R Literate Programming
>>>>>>>> ** R text output
>>>>>>>> A simple summary.
>>>>>>>> #+begin_src R
>>>>>>>>   x <- rnorm(10)
>>>>>>>>   summary(x)
>>>>>>>> #+end_src
>>>>>>>>
>>>>>>>> ** R graphics output
>>>>>>>> Note we use the object =x= generated in previous code block, thanks to
>>>>>>>> the header option =:session *R*=.  The output graphics file is
>>>>>>>> =a.png=.
>>>>>>>>
>>>>>>>> #+begin_src R  :file a.png
>>>>>>>>   y <- rnorm(10)
>>>>>>>>   plot(x, y)
>>>>>>>> #+end_src
>>>>>>>>
>>>>>>>> Same plot with larger dimension:
>>>>>>>>
>>>>>>>> #+begin_src R  :file b.png :width 800 :height 800
>>>>>>>>   plot(x, y)
>>>>>>>> #+end_src
>>>>>>>>
>>>>>>>>
>>>>>>>> Where do I wrong?
>>>>>>>>
>>>>>>>> Best
>>>>>>>> Riccardo
>>>>>>>> Hi, I&#39;m trying to generate some figure with R, into an org
>>>>>>>> session. Firstly I use the code in the org site. The problem is
>>>>>>>> that the code do not generate any figure. This is the code:
>>>>>>>> #+TITLE:Test
>>>>>>>> #+AUTHOR: Your Name
>>>>>>>> #+EMAIL: mailto:mailto:address@hidden
>>>>>>>> #+BABEL: :session *R* :cache yes :results output graphics :exports 
>>>>>>>> both :tangle yes
>>>>>>>>
>>>>>>>> * Example of Org-Babel for R Literate Programming
>>>>>>>> ** R text output
>>>>>>>> A simple summary.
>>>>>>>> #+begin_src R
>>>>>>>>   x <- rnorm(10)
>>>>>>>>   summary(x)
>>>>>>>> #+end_src
>>>>>>>>
>>>>>>>> ** R graphics output
>>>>>>>> Note we use the object =x= generated in previous code block, thanks to
>>>>>>>> the header option =:session *R*=.  The output graphics file is
>>>>>>>> =a.png=.
>>>>>>>>
>>>>>>>> #+begin_src R  :file a.png
>>>>>>>>   y <- rnorm(10)
>>>>>>>>   plot(x, y)
>>>>>>>> #+end_src
>>>>>>>>
>>>>>>>> Same plot with larger dimension:
>>>>>>>>
>>>>>>>> #+begin_src R  :file b.png :width 800 :height 800
>>>>>>>>   plot(x, y)
>>>>>>>> #+end_src
>>>>>>>> Where do I wrong?BestRiccardo
>>>>>>>
>>>>>>> <span class="HOEnZb">--
>>>>>>> Thomas S. Dye
>>>>>>> http://www.tsdye.com
>>>>>>> </span>
>>>
>>>
>>> Footnotes: 
>>> [1]  http://orgmode.org/worg/org-contrib/babel/languages.html
>
>


Footnotes: 
[1]  http://orgmode.org/worg/org-contrib/babel/languages.html

-- 
Eric Schulte
http://cs.unm.edu/~eschulte/