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[O] Bug: [babel] Order of definition of :var makes or breaks the results
From: |
Rainer M Krug |
Subject: |
[O] Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)] |
Date: |
Tue, 21 Jan 2014 15:17:49 +0100 |
User-agent: |
Notmuch/0.17 (http://notmuchmail.org) Emacs/24.3.1 (x86_64-apple-darwin13.0.0) |
Depending on the order in which variables are declared, the definitions
are correct or wrong.
In the example below, if DUMMY is declared first and SPECIES and
SPECIES2 are declared via :var+ there are missing rownames and / or
colnames as well as mixups (see below).
If DUMMY is declared *after the first* table (SPECIES) everything works
as expected.
I don't know if it is the same in other languages.
Example:
#+PROPERTY: rownames yes
#+PROPERTY: colnames yes
#+PROPERTY: var DUMMY="dummy"
* Species names and iespece codes
#+NAME: SPECIES
| | fullName | shortName | iespece | IFNName | color |
|---------+-----------------+-----------+---------+-----------------+-------|
| fagus | Fagus sylvatica | fagus | 3 | fagus_sylvatica | red |
| quercus | Quercus robur | quercus | 4 | quercus_robur | green |
#+PROPERTY: var+ SPECIES=SPECIES
* And some more
#+NAME: SPECIES2
| | fullName | shortName | iespece | IFNName | color |
|---------+---------------+-----------+---------+---------------+-------|
| no idea | ffff | | | | |
| quercus | Quercus robur | quercus | 4 | quercus_robur | green |
#+PROPERTY: var+ SPECIES2=SPECIES2
* The code
#+begin_src R :exports both :results output
SPECIES
#+end_src
#+RESULTS:
: fullName shortName iespece IFNName color
: no idea Fagus sylvatica fagus 3 fagus_sylvatica red
: quercus Quercus robur quercus 4 quercus_robur green
#+begin_src R :exports both :results output
SPECIES2
#+end_src
#+RESULTS:
: X X.1 X.2 X.3
: Quercus robur quercus 4 quercus_robur green
Remember to cover the basics, that is, what you expected to happen and
what in fact did happen. You don't know how to make a good report? See
http://orgmode.org/manual/Feedback.html#Feedback
Your bug report will be posted to the Org-mode mailing list.
------------------------------------------------------------------------
Emacs : GNU Emacs 24.3.1 (x86_64-apple-darwin13.0.0, NS apple-appkit-1265.00)
of 2013-12-13 on Rainers-MacBook-Pro-2.local
Package: Org-mode version 8.2.5f (release_8.2.5f-545-g630096 @
/Users/rainerkrug/.emacs.d/org-mode/lisp/)
current state:
==============
(setq
org-src-lang-modes '(("plantuml" . plantuml) ("ocaml" . tuareg) ("elisp" .
emacs-lisp) ("ditaa" . artist) ("asymptote" . asy)
("dot" . fundamental) ("sqlite" . sql) ("calc" .
fundamental) ("C" . c) ("cpp" . c++) ("C++" . c++)
("screen" . shell-script))
org-hide-leading-stars t
org-tab-first-hook '(org-hide-block-toggle-maybe
org-src-native-tab-command-maybe org-babel-hide-result-toggle-maybe
org-babel-header-arg-expand)
org-speed-command-hook '(org-speed-command-default-hook
org-babel-speed-command-hook)
org-ellipsis "〖 ✎ 〗"
org-occur-hook '(org-first-headline-recenter)
org-src-tab-acts-natively t
org-metaup-hook '(org-babel-load-in-session-maybe)
org-html-format-drawer-function '(lambda (name contents) contents)
org-src-window-setup 'current-window
org-latex-format-inlinetask-function 'ignore
org-confirm-shell-link-function 'y-or-n-p
org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
org-latex-format-headline-function 'org-latex-format-headline-default-function
org-startup-indented t
org-after-todo-state-change-hook '(org-clock-out-if-current)
org-latex-format-drawer-function '(lambda (name contents) contents)
org-odt-format-headline-function 'ignore
org-from-is-user-regexp "\\<Rainer M Krug\\>"
org-src-mode-hook '(org-src-babel-configure-edit-buffer
org-src-mode-configure-edit-buffer)
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-babel-pre-tangle-hook '(save-buffer)
org-mode-hook '(#[nil "\300\301\302\303\304$\207" [org-add-hook
change-major-mode-hook org-show-block-all append local] 5]
#[nil "\300\301\302\303\304$\207" [org-add-hook
change-major-mode-hook org-babel-show-result-all append local] 5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-ascii-format-drawer-function '(lambda (name contents width) contents)
org-odt-format-inlinetask-function 'ignore
org-ctrl-c-ctrl-c-hook '(org-babel-hash-at-point
org-babel-execute-safely-maybe)
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-hide-inline-tasks org-cycle-show-empty-lines
org-optimize-window-after-visibility-change)
org-plantuml-jar-path "/Users/rainerkrug/jar/plantuml.jar"
org-latex-packages-alist '(("" "color") ("" "listings"))
org-ctrl-k-protect-subtree "ask"
org-babel-tangle-lang-exts '(("latex" . "tex") ("emacs-lisp" . "el"))
org-confirm-elisp-link-function 'yes-or-no-p
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-odt-format-drawer-function '(lambda (name contents) contents)
org-latex-listings t
org-show-siblings '((default) (isearch t) (bookmark-jump . t))
org-html-format-headline-function 'ignore
org-structure-template-alist '(("le" "#+end_src \n\n#+begin_src emacs-lisp"
"<src lang=\"R\">\n\n</src>")
("lua" "#+begin_src lua \n ?\n#+end_src" "<src
lang=\"lua\">\n\n</src>")
("r" "#+begin_src R ?\n\n#+end_src" "<src
lang=\"R\">\n\n</src>")
("s" "#+BEGIN_SRC ?\n\n#+END_SRC" "<src
lang=\"?\">\n\n</src>")
("e" "#+BEGIN_EXAMPLE\n?\n#+END_EXAMPLE"
"<example>\n?\n</example>")
("q" "#+BEGIN_QUOTE\n?\n#+END_QUOTE"
"<quote>\n?\n</quote>")
("v" "#+BEGIN_VERSE\n?\n#+END_VERSE"
"<verse>\n?\n</verse>")
("V" "#+BEGIN_VERBATIM\n?\n#+END_VERBATIM"
"<verbatim>\n?\n</verbatim>")
("c" "#+BEGIN_CENTER\n?\n#+END_CENTER"
"<center>\n?\n</center>")
("l" "#+BEGIN_LaTeX\n?\n#+END_LaTeX" "<literal
style=\"latex\">\n?\n</literal>")
("L" "#+LaTeX: " "<literal
style=\"latex\">?</literal>")
("h" "#+BEGIN_HTML\n?\n#+END_HTML" "<literal
style=\"html\">\n?\n</literal>")
("H" "#+HTML: " "<literal
style=\"html\">?</literal>") ("a" "#+BEGIN_ASCII\n?\n#+END_ASCII" "")
("A" "#+ASCII: " "") ("i" "#+INDEX: ?"
"#+INDEX: ?")
("I" "#+INCLUDE: %file ?" "<include file=%file
markup=\"?\">"))
org-babel-load-languages '((R . t) (latex . t) (sh . t) (plantuml . t)
(emacs-lisp . t))
org-src-preserve-indentation t
org-babel-post-tangle-hook '(org-babel-run-post-tangle-script
org-babel-mark-file-as-tangled)
org-html-format-inlinetask-function 'ignore
org-agenda-files '("~/org")
org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
org-confirm-babel-evaluate nil
)
--
Rainer M. Krug, PhD (Conservation Ecology, SUN), MSc (Conservation Biology,
UCT), Dipl. Phys. (Germany)
Centre of Excellence for Invasion Biology
Stellenbosch University
South Africa
Tel : +33 - (0)9 53 10 27 44
Cell: +33 - (0)6 85 62 59 98
Fax : +33 - (0)9 58 10 27 44
Fax (D): +49 - (0)3 21 21 25 22 44
email: address@hidden
Skype: RMkrug
- [O] Bug: [babel] Order of definition of :var makes or breaks the results [8.2.5f (release_8.2.5f-545-g630096 @ /Users/rainerkrug/.emacs.d/org-mode/lisp/)],
Rainer M Krug <=