emacs-orgmode
[Top][All Lists]
Advanced

[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]

Bug: org export rewrites the org buffer. if Emacs crashes during the exp


From: Vladimir Nikishkin
Subject: Bug: org export rewrites the org buffer. if Emacs crashes during the export, the file gets corrupted [9.3.4 (9.3.4-5-ga0f3bb-elpa @ /home/lockywolf/.emacs.d/elpa/org-20200210/)]
Date: Thu, 28 May 2020 17:38:06 +0800


Remember to cover the basics, that is, what you expected to happen and
what in fact did happen.  You don't know how to make a good report?  See

     https://orgmode.org/manual/Feedback.html#Feedback

Your bug report will be posted to the Org mailing list.
------------------------------------------------------------------------

I have a very long org file, more than 70000 lines.

Exporting it is a naturally long process.
Additionally, some blocks are malformed, so the export process fails.
to debug them, I use toggle-debug-on-error

When I was debugging export today, I found that while exporting, org
destructively strips the header arguments from the blocks, such as
:exports, :results, :file.

It should be normally putting them back, I guess, but if
toggle-debug-on-error is on, and there are places where (debug) is
invoked or if emacs crashes (or is killed) during the export process,
the headers never go back.

Test file: https://gitlab.com/Lockywolf/chibi-sicp/-/blob/master/index.org

Emacs  : GNU Emacs 26.3 (build 1, x86_64-slackware-linux-gnu, GTK+ Version 
3.24.12)
 of 2019-11-26
Package: Org mode version 9.3.4 (9.3.4-5-ga0f3bb-elpa @ 
/home/lockywolf/.emacs.d/elpa/org-20200210/)

current state:
==============
(setq
 org-src-mode-hook '((lambda nil (modify-syntax-entry 60 ".") 
(modify-syntax-entry 62 ".")
                      (setq geiser-autodoc--inhibit t))
                     org-src-babel-configure-edit-buffer 
org-src-mode-configure-edit-buffer)
 org-latex-listings t
 org-link-shell-confirm-function 'yes-or-no-p
 org-babel-after-execute-hook '((lambda nil
                                 (if org-inline-image-overlays
                                  (progn (org-redisplay-inline-images)))
                                 )
                                )
 org-metadown-hook '(org-babel-pop-to-session-maybe)
 org-export-with-sub-superscripts '{}
 org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
 org-html-format-inlinetask-function 
'org-html-format-inlinetask-default-function
 org-pretty-entities t
 org-odt-format-headline-function 'org-odt-format-headline-default-function
 org-link-descriptive nil
 org-latex-pdf-process '("latexmk  -lualatex -outdir=%o -f %f")
 org-agenda-files '("~/Personal_Planner/Planner.org" 
"~/Personal_Planner/lockywolf_net.org"
                    "~/Personal_Planner/cyberpunk_smarthome.org"
                    "~/Personal_Planner/notes.org"
                    "~/Personal_Planner/2020-04-28-hotkeys-to-remember.txt.org"
                    "~/DevLinux/chibi-sicp/index.org")
 org-ascii-format-inlinetask-function 'org-ascii-format-inlinetask-default
 org-modules '(org-habit ol-w3m ol-bbdb ol-bibtex ol-docview ol-gnus ol-info 
ol-irc ol-mhe
               ol-rmail ol-eww)
 org-plantuml-jar-path "/usr/local/bin/plantuml.jar"
 org-mode-hook '(#[0 "\301\211\207" [imenu-create-index-function 
org-imenu-get-tree] 2]
                 turn-on-org-cdlatex org-tempo-setup
                 (lambda nil
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("p" . "src plantuml :noweb no :exports both :file 
")))
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("SO" . "src scheme :exports both :results output")))
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("SV" . "src scheme :exports both :results value")))
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("SE" . "src scheme :exports code")))
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("EL" . "src elisp :exports both :results output")))
                  (add-to-list (quote org-structure-template-alist)
                   (quote ("F" . "src f90 :exports both :results output")))
                  )
                 (lambda nil (modify-syntax-entry 60 ".") (modify-syntax-entry 
62 "."))
                 (lambda nil (imenu-add-to-menubar "Imenu"))
                 #[0 "\300\301\302\303\304$\207"
                   [add-hook change-major-mode-hook org-show-all append local] 
5]
                 #[0 "\300\301\302\303\304$\207"
                   [add-hook change-major-mode-hook org-babel-show-result-all 
append local] 5]
                 org-babel-result-hide-spec org-babel-hide-all-hashes 
org-eldoc-load)
 org-odt-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"]
 org-archive-hook '(org-attach-archive-delete-maybe)
 org-confirm-elisp-link-function 'yes-or-no-p
 org-agenda-before-write-hook '(org-agenda-add-entry-text)
 org-preview-latex-default-process 'imagemagick
 org-metaup-hook '(org-babel-load-in-session-maybe)
 org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn 
ENTRY)"]
 org-latex-format-drawer-function #[514 "\207" [] 3 "\n\n(fn _ CONTENTS)"]
 org-babel-pre-tangle-hook '(save-buffer)
 org-latex-compiler "lualatex"
 org-tab-first-hook '(org-babel-hide-result-toggle-maybe 
org-babel-header-arg-expand)
 org-babel-load-languages '((plantuml . t) (C . t) (scheme . t) (latex . t) 
(shell . t)
                            (fortran . t))
 org-log-done 'time
 org-link-abbrev-alist '(("bugzilla" . 
"http://10.1.2.9/bugzilla/show_bug.cgi?id=";)
                         ("url-to-ja" .
                          
"http://translate.google.fr/translate?sl=en&tl=ja&u=%h";)
                         ("google" . "http://www.google.com/search?q=";)
                         ("gmap" . "http://maps.google.com/maps?q=%s";)
                         ("omap" . 
"http://nominatim.openstreetmap.org/search?q=%s&polygon=1";)
                         ("ads" . 
"https://ui.adsabs.harvard.edu/search/q=%20author%3A\"%s\"";)
                         ("note" .
                          
"rtcite:~/GDrive_vladimir_nikishkin_AT_phystech_edu/BibTeX_Bibliography/bibliography-bib.org::#%s")
                         ("bib" .
                          
"rtcite:~/GDrive_vladimir_nikishkin_AT_phystech_edu/BibTeX_Bibliography/bibliography-bib.bib::%s")
                         )
 org-startup-align-all-tables t
 org-ascii-format-drawer-function #[771 "\207" [] 4 "\n\n(fn NAME CONTENTS 
WIDTH)"]
 org-src-lang-modes '(("arduino" . arduino) ("redis" . redis) ("php" . php) 
("C" . c)
                      ("C++" . c++) ("asymptote" . asy) ("bash" . sh) ("beamer" 
. latex)
                      ("calc" . fundamental) ("cpp" . c++) ("ditaa" . artist)
                      ("dot" . fundamental) ("elisp" . emacs-lisp) ("ocaml" . 
tuareg)
                      ("screen" . shell-script) ("shell" . sh) ("sqlite" . sql))
 org-catch-invisible-edits 'show
 org-occur-hook '(org-first-headline-recenter)
 org-log-into-drawer t
 org-edit-src-auto-save-idle-delay 15
 org-agenda-include-diary t
 org-structure-template-alist '(("F" . "src f90 :exports both :results output")
                                ("EL" . "src elisp :exports both :results 
output")
                                ("SE" . "src scheme :exports code")
                                ("SV" . "src scheme :exports both :results 
value")
                                ("SO" . "src scheme :exports both :results 
output")
                                ("p" . "src plantuml :noweb no :exports both 
:file ")
                                ("a" . "export ascii") ("c" . "center") ("C" . 
"comment")
                                ("e" . "example") ("E" . "export") ("h" . 
"export html")
                                ("l" . "export latex") ("q" . "quote") ("s" . 
"src")
                                ("v" . "verse"))
 org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-show-empty-lines
                  org-optimize-window-after-visibility-change)
 org-edit-src-turn-on-auto-save t
 org-speed-command-hook '(org-speed-command-activate 
org-babel-speed-command-activate)
 org-hierarchical-todo-statistics nil
 org-preview-latex-process-alist '((dvipng :programs ("latex" "dvipng") 
:description
                                    "dvi > png" :message
                                    "you need to install the programs: latex 
and dvipng."
                                    :image-input-type "dvi" :image-output-type 
"png"
                                    :image-size-adjust (1.0 . 1.0) 
:latex-compiler
                                    ("latex -interaction nonstopmode 
-output-directory %o %f")
                                    :image-converter ("dvipng -D %D -T tight -o 
%O %f"))
                                   (dvisvgm :programs ("latex" "dvisvgm") 
:description
                                    "dvi > svg" :message
                                    "you need to install the programs: latex 
and dvisvgm."
                                    :image-input-type "dvi" :image-output-type 
"svg"
                                    :image-size-adjust (1.7 . 1.5) 
:latex-compiler
                                    ("latex -interaction nonstopmode 
-output-directory %o %f")
                                    :image-converter ("dvisvgm %f -n -b min -c 
%S -o %O"))
                                   (imagemagick :programs ("latex" "convert") 
:description
                                    "pdf > png" :message
                                    "you need to install the programs: latex 
and imagemagick."
                                    :image-input-type "pdf" :image-output-type 
"png"
                                    :image-size-adjust (1.0 . 1.0) 
:latex-compiler
                                    ("lualatex -interaction nonstopmode 
-output-directory %o %f")
                                    :image-converter
                                    ("convert -density %D -trim -antialias %f 
-quality 100 %O")
                                    )
                                   )
 org-odt-format-inlinetask-function 'org-odt-format-inlinetask-default-function
 org-babel-tangle-lang-exts '(("fortran" . "F90") ("latex" . "tex") ("D" . "d")
                              ("C++" . "cpp") ("emacs-lisp" . "el") ("elisp" . 
"el"))
 org-format-latex-options '(:foreground default :background default :scale 3.0
                            :html-foreground "Black" :html-background 
"Transparent"
                            :html-scale 1.0 :matchers ("begin" "$1" "$" "$$" 
"\\(" "\\["))
 org-latex-listings-langs '((patch "bash") (shell "bash") (plantuml "MetaPost")
                            (elisp "elisp") (scheme "Lisp") (emacs-lisp "Lisp") 
(lisp "Lisp")
                            (clojure "Lisp") (c "C") (cc "C++") (fortran 
"fortran")
                            (perl "Perl") (cperl "Perl") (python "Python") 
(ruby "Ruby")
                            (html "HTML") (xml "XML") (tex "TeX") (latex 
"[LaTeX]TeX")
                            (shell-script "bash") (gnuplot "Gnuplot") (ocaml 
"Caml")
                            (caml "Caml") (sql "SQL") (sqlite "sql") (makefile 
"make")
                            (R "r"))
 org-confirm-shell-link-function 'yes-or-no-p
 org-link-parameters '(("attachment" :follow org-attach-open-link :export
                        org-attach-export-link :complete 
org-attach-complete-link)
                       ("id" :follow org-id-open)
                       ("eww" :follow eww :store org-eww-store-link)
                       ("rmail" :follow org-rmail-open :store 
org-rmail-store-link)
                       ("mhe" :follow org-mhe-open :store org-mhe-store-link)
                       ("irc" :follow org-irc-visit :store org-irc-store-link 
:export
                        org-irc-export)
                       ("info" :follow org-info-open :export org-info-export 
:store
                        org-info-store-link)
                       ("gnus" :follow org-gnus-open :store org-gnus-store-link)
                       ("docview" :follow org-docview-open :export 
org-docview-export :store
                        org-docview-store-link)
                       ("bibtex" :follow org-bibtex-open :store 
org-bibtex-store-link)
                       ("bbdb" :follow org-bbdb-open :export org-bbdb-export 
:complete
                        org-bbdb-complete-link :store org-bbdb-store-link)
                       ("w3m" :store org-w3m-store-link)
                       ("rtcite" :follow org-bibtex-open :export 
my-rtcite-export-handler)
                       ("file+sys") ("file+emacs") ("shell" :follow 
org-link--open-shell)
                       (#1="news" :follow
                        #[257 #2="\301\300\302Q!\207" [#1# browse-url #4=":"] 5 
#5=
                          "\n\n(fn URL)"]
                        )
                       (#3="mailto" :follow #[257 #2# [#3# browse-url #4#] 5 
#5#])
                       (#6="https" :follow #[257 #2# [#6# browse-url #4#] 5 
#5#])
                       (#7="http" :follow #[257 #2# [#7# browse-url #4#] 5 #5#])
                       (#8="ftp" :follow #[257 #2# [#8# browse-url #4#] 5 #5#])
                       ("help" :follow org-link--open-help)
                       ("file" :complete org-link-complete-file)
                       ("elisp" :follow org-link--open-elisp)
                       ("doi" :follow org-link--open-doi))
 org-latex-format-headline-function 'org-latex-format-headline-default-function
 org-agenda-start-with-follow-mode t
 org-link-elisp-confirm-function 'yes-or-no-p
 org-org-src-mode-hook '((lambda nil (modify-syntax-entry 60 ".")
                          (modify-syntax-entry 62 "."))
                         )
 org-latex-format-inlinetask-function 
'org-latex-format-inlinetask-default-function
 org-tab-before-tab-emulation-hook '(org-tempo-complete-tag)
 org-html-format-drawer-function #[514 "\207" [] 3 "\n\n(fn NAME CONTENTS)"]
 org-latex-packages-alist '((#1="" "color") (#1# "listings"))
 org-image-actual-width nil
 org-html-use-infojs t
 org-latex-classes '(("acmart"
                      
"\\documentclass[sigplan,anonymous,review,timestamp,natbib=false]{acmart}"
                      ("\\section{%s}" . "\\section*{%s}")
                      ("\\subsection{%s}" . "\\subsection*{%s}")
                      ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
                     ("article" "\\documentclass[11pt]{article}"
                      ("\\section{%s}" . "\\section*{%s}")
                      ("\\subsection{%s}" . "\\subsection*{%s}")
                      ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
                      ("\\paragraph{%s}" . "\\paragraph*{%s}")
                      ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
                     ("report" "\\documentclass[11pt]{report}" ("\\part{%s}" . 
"\\part*{%s}")
                      ("\\chapter{%s}" . "\\chapter*{%s}")
                      ("\\section{%s}" . "\\section*{%s}")
                      ("\\subsection{%s}" . "\\subsection*{%s}")
                      ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
                     ("book" "\\documentclass[11pt]{book}" ("\\part{%s}" . 
"\\part*{%s}")
                      ("\\chapter{%s}" . "\\chapter*{%s}")
                      ("\\section{%s}" . "\\section*{%s}")
                      ("\\subsection{%s}" . "\\subsection*{%s}")
                      ("\\subsubsection{%s}" . "\\subsubsection*{%s}"))
                     )
 org-html-format-headline-function 'org-html-format-headline-default-function
 org-confirm-babel-evaluate 'my-org-confirm-babel-evaluate
 org-use-sub-superscripts '{}
 org-latex-listings-options '(("numbers" "left") ("frame" "single"))
 org-use-speed-commands t
 org-latex-bib-compiler "biber"
 org-default-notes-file "~/Personal_Planner/notes.org"
 )
-- 
--
Vladimir Nikishkin (MiEr, lockywolf)



reply via email to

[Prev in Thread] Current Thread [Next in Thread]