Bug: refreshing agenda moves all lines up [9.4.6 (9.4.6-12-gdcc3a8-elpa @ /Users/pu/.emacs.d/elpa/org-20210802/)]

[pat]

Hello everybody,

my first bug report so I hope this is useful.

Since the last org-mode update, whenever I press "r" to refresh my customised agenda view (org-agenda-redo),
the whole buffer moves up by 1 line, which hasn't been the case until now.

Emacs : GNU Emacs 27.2 (build 1, aarch64-apple-darwin20.5.0, NS appkit-2022.50 Version 11.4 (Build 20F71))
of 2021-06-05
Package: Org mode version 9.4.6 (9.4.6-12-gdcc3a8-elpa @ /Users/pu/.emacs.d/elpa/org-20210802/)

current state:
==============
(setq
org-src-mode-hook '(org-src-babel-configure-edit-buffer org-src-mode-configure-edit-buffer)
org-capture-prepare-finalize-hook '(org-roam-capture--install-finalize)
org-link-shell-confirm-function 'yes-or-no-p
org-metadown-hook '(org-babel-pop-to-session-maybe)
org-clock-out-hook '(org-clock-remove-empty-clock-drawer)
org-roam-db-node-include-function #[0 "\300\207" [t] 1]
org-refile-targets '((nil :maxlevel . 9))
org-agenda-files '("/Users/pu/nc/Emacs/org/work.org"
"/Users/pu/nc/Emacs/org-roam/20210724155503-vakanz_cl.org"
"/Users/pu/nc/Emacs/org-roam/20210725223625-geofencing.org"
"/Users/pu/nc/Emacs/org-roam/20210726130719-borgbackup.org"
"/Users/pu/nc/Emacs/org-roam/20210726131153-backup.org"
"/Users/pu/nc/Emacs/org-roam/20210727000115-agile.org"
"/Users/pu/nc/Emacs/org-roam/20210727001222-gdpr.org"
"/Users/pu/nc/Emacs/org-roam/20210727105327-emacs.org"
"/Users/pu/nc/Emacs/org-roam/20210727105409-toc.org"
"/Users/pu/nc/Emacs/org-roam/20210728145813-alter_ego.org"
"/Users/pu/nc/Emacs/org-roam/20210730111443-communication.org"
"/Users/pu/nc/Emacs/org-roam/20210730111506-sync_vs_async.org"
"/Users/pu/nc/Emacs/org-roam/20210801155154-ios_backups.org")
org-mode-hook '(#[0 "\300\301\302\303\304$\207"
[add-hook change-major-mode-hook org-show-all append local] 5]
#[0 "\300\301\302\303\304$\207"
[add-hook change-major-mode-hook org-babel-show-result-all append local]
5]
org-babel-result-hide-spec org-babel-hide-all-hashes)
org-outline-path-complete-in-steps nil
org-archive-hook '(org-attach-archive-delete-maybe)
org-roam-capture-new-node-hook '(org-roam-capture--insert-ref)
org-agenda-use-time-grid nil
org-confirm-elisp-link-function 'yes-or-no-p
org-todo-repeat-to-state "TODO"
org-agenda-before-write-hook '(org-agenda-add-entry-text)
org-metaup-hook '(org-babel-load-in-session-maybe)
org-bibtex-headline-format-function #[257 "\300\236A\207" [:title] 3 "\n\n(fn ENTRY)"]
org-babel-pre-tangle-hook '(save-buffer)
org-tab-first-hook '(org-babel-hide-result-toggle-maybe org-babel-header-arg-expand)
org-hide-leading-stars t
org-load-hook '((closure (t) nil (define-key org-mode-map "a" 'org-agenda)
(setq org-hide-leading-stars t) (setq org-return-follows-link t)
(setq org-agenda-show-future-repeats nil) (setq org-tags-column -90)
(setq org-todo-keyword-faces
'(("WAIT" :foreground "dark cyan") ("TODO" :foreground "orange")
("DELG" :foreground "brown") ("DONE" :foreground "grey"))
)
(setq calendar-week-start-day 1) (setq org-deadline-warning-days 0)
(setq org-todo-repeat-to-state "TODO")
(setq org-agenda-sorting-strategy
'((agenda priority-down todo-state-down alpha-up)
(todo priority-down category-keep) (tags priority-down category-keep)
(search category-keep))
)
(setq org-agenda-custom-commands
'(("L" "PU's view"
((todo "TODO"
((org-agenda-skip-function '(org-agenda-skip-entry-if 'scheduled))
(org-agenda-prefix-format '((todo . " "))))
)
(agenda ""
((org-agenda-span 15) (org-agenda-prefix-format '((agenda . " ")))))
nil ("~/nc/Emacs/org/agenda.txt"))
)
)
)
(setq org-agenda-start-with-follow-mode t))
)
org-agenda-loop-over-headlines-in-active-region nil
org-roam-mode-section-functions '(org-roam-backlinks-section org-roam-reflinks-section
org-roam-unlinked-references-section)
org-roam-find-file-hook '(org-roam-open-id-with-org-roam-db-h
org-roam--replace-roam-links-on-save-h
org-roam--register-completion-functions
org-roam-buffer--setup-redisplay-h org-roam-db--update-on-save-h)
org-occur-hook '(org-first-headline-recenter)
org-agenda-mode-hook '((closure (t) nil
(define-key org-agenda-mode-map "\360" 'org-agenda-backward-block)
(define-key org-agenda-mode-map "\356" 'org-agenda-forward-block))
(closure (t) nil (define-key org-agenda-mode-map "k" 'kan)))
org-log-into-drawer t
org-cycle-hook '(org-cycle-hide-archived-subtrees org-cycle-hide-drawers
org-cycle-show-empty-lines org-optimize-window-after-visibility-change)
org-speed-command-hook '(org-speed-command-activate org-babel-speed-command-activate)
org-roam-node-annotation-function 'org-roam-node--annotation
org-tags-column -90
org-return-follows-link t
org-export-before-parsing-hook '(org-attach-expand-links)
org-confirm-shell-link-function 'yes-or-no-p
org-link-parameters '(("attachment" :follow org-attach-follow :complete
org-attach-complete-link)
("eww" :follow org-eww-open :store org-eww-store-link)
("rmail" :follow org-rmail-open :store org-rmail-store-link)
("mhe" :follow org-mhe-open :store org-mhe-store-link)
("irc" :follow org-irc-visit :store org-irc-store-link :export
org-irc-export)
("info" :follow org-info-open :export org-info-export :store
org-info-store-link)
("gnus" :follow org-gnus-open :store org-gnus-store-link)
("docview" :follow org-docview-open :export org-docview-export :store
org-docview-store-link)
("bibtex" :follow org-bibtex-open :store org-bibtex-store-link)
("bbdb" :follow org-bbdb-open :export org-bbdb-export :complete
org-bbdb-complete-link :store org-bbdb-store-link)
("w3m" :store org-w3m-store-link)
("deft" :follow deft--org-follow-link :store org-deft-store-link
:complete deft--org-complete)
("roam" :follow org-roam-link-follow-link) ("id" :follow org-id-open)
("file+sys") ("file+emacs") ("shell" :follow org-link--open-shell)
("news" :follow
#[514 "\301\300\302Q\"\207" ["news" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
("mailto" :follow
#[514 "\301\300\302Q\"\207" ["mailto" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
("https" :follow
#[514 "\301\300\302Q\"\207" ["https" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
("http" :follow
#[514 "\301\300\302Q\"\207" ["http" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
("ftp" :follow
#[514 "\301\300\302Q\"\207" ["ftp" browse-url ":"] 6
"\n\n(fn URL ARG)"]
)
("help" :follow org-link--open-help)
("file" :complete org-link-complete-file)
("elisp" :follow org-link--open-elisp)
("doi" :follow org-link--open-doi))
org-agenda-skip-scheduled-if-done t
org-agenda-start-with-follow-mode t
org-capture-templates '(("t" "Todo (work)" entry
(file+headline "~/nc/Emacs/org/work.org" "Capture")
"* TODO %^{Task Description}" :prepend t)
("n" "Note (work)" entry
(file+headline "~/nc/Emacs/org/work.org" "Capture")
(file "~/nc/Emacs/org/capture-note.txt") :prepend t)
)
org-link-elisp-confirm-function 'yes-or-no-p
org-todo-keyword-faces '(("WAIT" :foreground "dark cyan") ("TODO" :foreground "orange")
("DELG" :foreground "brown") ("DONE" :foreground "grey"))
org-roam-directory "/Users/pu/nc/Emacs/org-roam"
org-deadline-warning-days 0
org-agenda-custom-commands '(("L" "PU's view"
((todo "TODO"
((org-agenda-skip-function
'(org-agenda-skip-entry-if 'scheduled))
(org-agenda-prefix-format '((todo . " "))))
)
(agenda ""
((org-agenda-span 15)
(org-agenda-prefix-format '((agenda . " "))))
)
nil ("~/nc/Emacs/org/agenda.txt"))
)
)
org-agenda-sorting-strategy '((agenda priority-down todo-state-down alpha-up)
(todo priority-down category-keep)
(tags priority-down category-keep) (search category-keep))
org-agenda-show-future-repeats nil
)