[gnuastro-commits] master updated (89db01d -> dd4d43e)

[Mohammad Akhlaghi]

makhlaghi pushed a change to branch master.

      from  89db01d   NEWS: minor edits in the parts for next stable release
       new  3df6490   Crop works in 3D, except for --polygon
       new  42e04b6   Recent changes in master merged
       new  a11e71c   Merged with recent changes in master
       new  17d6f65   Merged recent corrections in master
       new  f25b55e   Merged with recent changes in master
       new  73fdf0c   MakeProfiles builds 3D ellipsoids
       new  d14384a   Minor corrections in MakeProfiles manual
       new  5abb468   Other minor corrections in the documentation
       new  1483201   Noised cube created in make check
       new  3e76e1f   MakeProfiles --kernel builds 3D kernels also
       new  03d73fe   Some minor corrections in code and comments
       new  bdeaba9   Corrected name of 3D catalog for tarball inclusion
       new  40f0a56   Minor corrections to MakeProfiles continued
       new  87ab805   Identifiers for integer constants in BZERO comparisons
       new  6b53c5e   Bug fixes in master: commits 1ff1c25 and 540af65
       new  adeb1c6   NoiseChisel's convolution step in 3D completed
       new  ace4160   New --mcolisbrightness option for MakeProfiles
       new  f06acc5   Merged recent work from master
       new  61aec7b   Convolve name and dimensionality checks
       new  8372486   NoiseChisel's detection complete in 3D
       new  4627ddf   NoiseChisel segmentation working in 3D, test added
       new  1560a54   Default NoiseChisel kernel in 3D changed to 1.5 pixels
       new  81f3f65   More --coordcol options acceptable in Crop
       new  e47f8db   Merged recent work in master
       new  4223e60   Suggestions on viewing/inspecting NoiseChisel's output
       new  8fa5ff1   Minor edit in book (part added in last commit)
       new  6cc3d25   No 3D projections in function to inspect NoiseChisel 
outputs
       new  4d2508f   Fixed NoiseChisel opening and dilation and merged with 
master
       new  e990860   Merged recent updates in master
       new  6bdc5d6   Oversegmentation connectivity one less for 3D
       new  6086579   Merged recent work in master (corrected conflicts)
       new  6f4e484   Merged with recent updates in master
       new  be3bfd8   NoiseChisel configuration file in 3D updated
       new  b0d5fab   Merged recent work from master, no conflicts
       new  06798a5   Crop's --checkcenter works on 3D dataset
       new  3b6c15d   Merged with recent work in master, no conflicts
       new  fb3660f   MakeCatalog works in 3D
       new  4fedb9d   Merged with master, conflicts fixed
       new  e92fd9c   Merged recent work in master, conflicts fixed
       new  9dda05c   Merged recent work from the master branch with corrections
       new  218a7db   Brought in recent work from master, corrections made
       new  eb91303   Merged recent work in master, conflicts fixed
       new  54b099d   Neighbors options doc generalized for different dimensions
       new  5cd3c1e   Recent work in master merged, small conflicts fixed
       new  325d717   3D matching now in Match program and library
       new  737a0cd   Merged recent corrections in master branch
       new  d7e0037   Brought in recent work in master
       new  303e6e2   Incorporated recent work, minor conflict corrected
       new  45bd003   Imported recent work in master, conflicts fixed
       new  fd51c80   Imported recent work from master, no conflicts
       new  1b0046b   Recent additions in master imported here, no conflicts
       new  5831e9e   Recent work in master imported, no conflicts
       new  e11098d   Recent work in master imported, minor conflicts fixed
       new  b1ea932   Separate Segment program now available in 3D
       new  a4dbaba   Recent work in master imported, minor conflict fixed
       new  ec3c102   Single to conditionally open ds9 for multi-HDU 2D or 3D
       new  9285abe   Imported recent work from master with corrections
       new  0597cea   Imported work in master, no conflicts
       new  0a8324f   MakeProfiles kernel option can be elongated in 
3rd-dimension
       new  6f85919   Connectivity of 2, for filling pseudo-detection holes in 
3D
       new  442d052   Imported work in master, no conflicts
       new  1af4ea9   Correct checks for kernel dimension in NoiseChisel and 
Segment
       new  c91d988   Recent work in master merged, conflicts corrected
       new  2491c91   Imported work in master, minor conflict in book fixed
       new  d13c715   Imported work in master, no conflicts
       new  f537368   Segment's default 3D configuration file in tarball
       new  486f915   Imported recent work in master, conflicts fixed
       new  91f2d3e   Imported recent work in master, conflicts fixed
       new  ee4bf1e   Imported recent work from master, Segment's 3D kernels 
added
       new  63b4edd   Imported work in master, conflicts fixed
       new  133e277   Imported recent work from master, conflicts fixed
       new  0ced9e5   Imported recent work in master, no conflicts
       new  88935ae   Dataset pointers initialized to NULL in 
upperlimit_write_check
       new  d6051a1   Upperlimit magnitude in 3D, corrected creation of check 
table
       new  5dac3c3   Recent work in master imported, small conflict in book 
fixed
       new  2c6c7e0   Imported recent work, no conflicts
       new  3882956   Narrow-band areas from MakeCatalog in 3D datasets
       new  4021652   Imported recent work in master, conflicts fixed
       new  d02c999   Recent work in master imported, conflicts fixed
       new  05cc693   Added 3rd dimension to MakeCatalog's minimum-maximum 
columns
       new  8d64628   Recent work in master imported, minor conflicts fixed
       new  800c769   Imported all the work in master, conflicts fixed
       new  e2aba57   Recent work in master imported, conflicts fixed
       new  ac91655   Imported recent work in master, no conflicts
       new  a42ac37   Fixed MakeProfiles loop in checking radius values
       new  abe82cb   Imported recent work in master, no conflicts
       new  d57e0e6   New spectrum measurement from 3D inputs in MakeCatalog
       new  a8428fe   Imported recent work in master, conflicts fixed
       new  22d0fba   Imported recent work in master, no conflicts
       new  1f9d941   Imported recent work in master, conflicts fixed
       new  0eaf0dc   Imported recent work in master, conflicts fixed
       new  8edc804   Imported recent work in master, minor conflic fixed
       new  b5385f7   Projected spectra given NaN when no measurement on slice
       new  9e2397a   Imported recent work in master, no conflicts
       new  175354f   All MakeCatalog spectrums set to NaN when no measurement 
was done
       new  9258f68   Imported recent work in master, minor conflict fixed
       new  fe0e594   Imported recent work in master, no conflicts
       new  924787b   Updated copyright year in files specific to this branch
       new  313d522   Imported recent work in master, minor conflict fixed
       new  fbbc2fc   Imported recent work in master, minor conflict fixed
       new  2dba72f   Imported work in master, conflicts fixed, changes made
       new  b3416de   Imported recent work in master, conflicts fixed
       new  ac2a821   Imported recent work in master, conflicts fixed
       new  353c0c1   Imported recent work in master, conflict fixed
       new  f21c30f   Imported recent work in master, no conflicts
       new  5d5fd95   NoiseChisel: independent test of input's dimensions
       new  dadb3f3   Imported recent work in master, minor conflicts fixed
       new  3f51e31   Imported work in master, conflicts fixed, corrections made
       new  d0d8d20   Imported recent work in master, minor conflicts fixed
       new  536b056   Imported recent changes in master, conflicts in book fixed
       new  6e11585   Imported recent work in master, minor conflicts fixed
       new  aa80ac4   Imported recent updates in master branch, minor conflict 
fixed
       new  dd4d43e   NoiseChisel and Segment: now working on 3D data cubes


Summary of changes:
 NEWS                                               |  14 +++
 bin/noisechisel/Makefile.am                        |   4 +-
 bin/noisechisel/args.h                             |   4 +-
 ...{astnoisechisel.conf => astnoisechisel-3d.conf} |  32 ++---
 bin/noisechisel/detection.c                        |  83 +++++++++----
 bin/noisechisel/kernel-3d.h                        | 130 +++++++++++++++++++++
 bin/noisechisel/ui.c                               |  68 +++++++----
 bin/segment/Makefile.am                            |   5 +-
 .../{astsegment.conf => astsegment-3d.conf}        |  10 +-
 bin/segment/clumps.c                               |  48 +++++---
 bin/segment/kernel-3d.h                            | 130 +++++++++++++++++++++
 bin/segment/ui.c                                   |  37 ++++--
 doc/gnuastro.texi                                  |  78 ++++++++++++-
 tests/Makefile.am                                  |  10 +-
 .../simple-3d.sh => noisechisel/noisechisel-3d.sh} |  11 +-
 .../simple-3d.sh => segment/segment-3d.sh}         |  12 +-
 16 files changed, 555 insertions(+), 121 deletions(-)
 copy bin/noisechisel/{astnoisechisel.conf => astnoisechisel-3d.conf} (72%)
 create mode 100644 bin/noisechisel/kernel-3d.h
 copy bin/segment/{astsegment.conf => astsegment-3d.conf} (86%)
 create mode 100644 bin/segment/kernel-3d.h
 copy tests/{mkcatalog/simple-3d.sh => noisechisel/noisechisel-3d.sh} (80%)
 copy tests/{mkcatalog/simple-3d.sh => segment/segment-3d.sh} (81%)