[Gsrc-commit] trunk r8625: update samtools to 1.16.1

[Carl Hansen]

------------------------------------------------------------
revno: 8625
revision-id: carlhansen1234@gmail.com-20221004210054-o0k6yx4xgyvie40a
parent: carlhansen1234@gmail.com-20221004180416-lw4dqqcogpeqrv76
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2022-10-04 14:00:54 -0700
message:
  update samtools to 1.16.1
modified:
  pkg/bio/samtools/Makefile      makefile-20160617195624-kwz1a09vkg4le6fu-176

=== modified file 'pkg/bio/samtools/Makefile'
--- a/pkg/bio/samtools/Makefile 2022-10-04 18:04:16 +0000
+++ b/pkg/bio/samtools/Makefile 2022-10-04 21:00:54 +0000
@@ -39,40 +39,42 @@
 MASTER_SITES = $(MASTER_GITHUB)
 MASTER_SUBDIR = $(GARNAME)/$(GARNAME)/releases/download/$(GARVERSION)/
 DISTFILES = $(DISTNAME).tar.bz2
-CONFIGURE_SCRIPTS =$(WORKSRC)/configure
-#BUILD_SCRIPTS = $(WORKSRC)/Makefile
-#BUILD_SCRIPTS = it
-#INSTALL_SCRIPTS = $(WORKSRC)/Makefile lib headers #programs lib headers man
+
+#CONFIGURE_SCRIPTS = $(WORKSRC)/configure
+BUILD_SCRIPTS = $(WORKSRC)/Makefile
+#INSTALL_SCRIPTS = $(WORKSRC)/Makefile  #  lib headers man  #programs
+INSTALL_SCRIPTS = it
 
 BUILDDEPS =
 LIBDEPS = 
+WORKOBJ = $(WORKSRC) 
+
 # apt install  libbz2-1.0 libbz2-dev 
 ######################################################################
 
 include ../../../gar/gar.lib/auto.mk
 include config.mk
 
-#export DESTDIR=$(packageprefix)/packages/$(PACKAGENAME)
-
-inf:
-       echo $(WORKSRC) $(WORKOBJ)
+DESTDIR=$(packageprefix)/packages/$(PACKAGENAME)
 
 
 pre-install: build
        mkdir -p $(packageprefix)/packages/$(PACKAGENAME)
        mkdir -p $(prefix)/packages/$(PACKAGENAME)
-
-
+       $(MAKECOOKIE)
+  
+# FIXME install
+install-it: install-headers
+       cd $(WORKSRC) &&  $(MAKE) install -
+       $(MAKECOOKIE)
+#  
 #INSTALL_ARGS += prefix=$(packageprefix)
-#
-#install-lib:
-#      @printf "[$(OK)install$(OFF)] $(MSG)Installing libbam.$(OFF)\n"
-#      $(INSTALL_LIB) $(WORKSRC)/libbam.a
-#      $(MAKECOOKIE)
-#
-#install-headers:
-#      install -d $(packageprefix)/include/bam
-#      for f in $(WORKSRC)/*.h; do \
-#              install -m644 $$f $(packageprefix)/include/bam/`basename $$f`; \
-#      done
-#      $(MAKECOOKIE)
+#  
+install-headers:
+       install -d $(packageprefix)/include/bam
+       for f in $(WORKSRC)/*.h; do \
+            install -m644 $$f $(packageprefix)/include/bam/`basename $$f`; \
+       done
+       $(MAKECOOKIE)
+
+#