[Gsrc-commit] trunk r9158: macs bio program inprogress

[Carl Hansen]

------------------------------------------------------------
revno: 9158
revision-id: carlhansen1234@gmail.com-20230418165920-uhv4t32iy1lvhioq
parent: carlhansen1234@gmail.com-20230418165350-hsr87v7kylcqthol
committer: carlhansen1234@gmail.com
branch nick: trunk
timestamp: Tue 2023-04-18 09:59:20 -0700
message:
  macs bio program inprogress
modified:
  gar/gar.lib/python.mk          python.mk-20160617013740-b2gc1gamt0k7pzjx-9
  pkg/bio/macs/Makefile          makefile-20160617195624-kwz1a09vkg4le6fu-120
  pkg/bio/macs/sha256sums        sha256sums-20160617195624-kwz1a09vkg4le6fu-121

=== modified file 'gar/gar.lib/python.mk'
--- a/gar/gar.lib/python.mk     2022-09-22 21:13:51 +0000
+++ b/gar/gar.lib/python.mk     2023-04-18 16:59:20 +0000
@@ -17,6 +17,7 @@
 # You should have received a copy of the GNU General Public License
 # along with this program. If not, see <http://www.gnu.org/licenses/>.
 
+# hmm, it seems WORKSRC should be same as WORKOBJ...
 CONFIGURE_SCRIPTS ?= $(WORKSRC)/setup.py
 BUILD_SCRIPTS ?= $(WORKOBJ)/setup.py
 INSTALL_SCRIPTS ?= $(WORKOBJ)/setup.py
@@ -24,4 +25,4 @@
 include ../../../gar/gar.mk
 
 
-#FIXME update ython setuptools or whatever
+#FIXME update python setuptools or whatever

=== modified file 'pkg/bio/macs/Makefile'
--- a/pkg/bio/macs/Makefile     2023-04-17 02:26:14 +0000
+++ b/pkg/bio/macs/Makefile     2023-04-18 16:59:20 +0000
@@ -15,11 +15,12 @@
 # You should have received a copy of the GNU General Public License
 # along with GSRC.  If not, see <http://www.gnu.org/licenses/>.
 
-NAME = MACS
+NAME = MACS 3
 GARNAME = macs
 UPSTREAMNAME = MACS
-GARVERSION = 1.4.2
-HOME_URL = http://liulab.dfci.harvard.edu/MACS/
+GARVERSION = 3.0.0b1
+HOME_URL = https://pypi.org/project/MACS3/
+#or https://github.com/macs3-project/MACS/
 DESCRIPTION = Model-based analysis for ChIP-Seq
 define BLURB
 MACS is a program for predicting protein-DNA interactions from ChIP-
@@ -31,15 +32,15 @@
 CITE = doi:10.1186/gb-2008-9-9-r137
 WORKOBJ = $(WORKSRC)
 ######################################################################
-
+# https://github.com/macs3-project/MACS/archive/refs/tags/v3.0.0b1.tar.gz
 MASTER_SITES = $(MASTER_GITHUB)
-MASTER_SUBDIR = downloads/taoliu/$(UPSTREAMNAME)/
-DISTFILES = $(DISTNAME).tar.gz
+MASTER_SUBDIR = macs3-project/MACS/archive/refs/tags/
+DISTFILES = v$(GARVERSION).tar.gz
 
 BUILDDEPS =
 LIBDEPS =
 
-# HINT: this requires python2 , not python3.
+# HINT: version 1  requires python2 , not python3.
 # install python2 in your path, then build this thusly:
 # PYTHON=python2  make 
 # PYTHON=python2  make  install
@@ -48,3 +49,6 @@
 
 include ../../../gar/gar.lib/python.mk
 include config.mk
+
+#? or pip install macs3
+

=== modified file 'pkg/bio/macs/sha256sums'
--- a/pkg/bio/macs/sha256sums   2016-06-17 19:57:40 +0000
+++ b/pkg/bio/macs/sha256sums   2023-04-18 16:59:20 +0000
@@ -1,1 +1,1 @@
-37788f88d07473e28ddcbf0a29fead48c7556415bf4df7b6bee479ea7ec334f4  
download/MACS-1.4.2.tar.gz
+bda4256c73bfe7b6be9961917f6d8c2a71a95af368002d6fa48ca71134847c0a  
download/v3.0.0b1.tar.gz