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Help with debugging an error


From: Xabush Semrie
Subject: Help with debugging an error
Date: Sat, 15 Jun 2019 14:22:58 +0300

Hi all,

I have been facing the following error in my code and it is cryptic to me.
I have been scratching my head to understand the error message for weeks
but I can’t seem to understand it. Can someone please take a look at show
some pointers?

The error message:

Failed to execute '*(parse (append (list (gene-info (mapSymbol (list
"SPAG9" )))) (list ( gene-go-annotation (list "SPAG9" ) "biological_process
cellular_component molecular_function" 3)( gene-pathway-annotation (list
"SPAG9" ) "reactome smpdb" "False" "False" )(
biogrid-interaction-annotation (list "SPAG9" ) "Proteins" ))) *"TZN6sba"
(list "SPAG9" ))' Backtrace: 14 (apply-smob/1 #<catch-closure
7fc7d011a3a0>) 13 (*apply-smob*/1 #<catch-closure 7fc7d011a0a0>) In
ice-9/boot-9.scm: 2312:4 12 (save-module-excursion _) In
ice-9/eval-string.scm: 38:6 11 (read-and-eval #<input: string 7fc7c661bc40>
#:lang_ ) In ice-9/eval.scm: 619:8 10 ( _#(#(#(#(#(#(#(#(#(#(#(#) …) …) …)
…) …) …) …) …) …) …)) 626:19 9 (_ #(#(#(#(#(#(#(#(#(#(#(#) …) …) …) …) …)
…) …) …) …) …)) 619:8 8 ( _#(#(#(#(#(#(#(#<directory (guile-…>) …) …) …) …)
…) …)) In srfi/srfi-1.scm: 640:9 7 (for-each #<procedure 7fc7c66426a0 at
ice-9/eval.scm:3…> …) 640:9 6 (for-each #<procedure 7fc7c66425e0 at
ice-9/eval.scm:3…> …) In ice-9/eval.scm: 259:9 5 (_ #(#(#<directory
(guile-user) 7fc7c7446140> #<v…> …) …)) 298:42 4 ( _#(#(#<directory
(guile-user) 7fc7c7446140>) "SPAG9" …)) 155:9 3 (_ #(#(#<directory
(guile-user) 7fc7c7446140>) "SPAG9" …)) In rnrs/records/procedural.scm:
218:2 2 (_ "SPAG9") In ice-9/boot-9.scm: 751:25 1 (dispatch-exception 0
r6rs:exception (#<r6rs:record:&r…>)) In unknown file: 0 (*apply-smob*/1
#<catch-closure 7fc7d0122c00> # #<r6rs:re…>) ERROR: In procedure
apply-smob/1: In procedure #<r6rs:record:&raise-object-wrapper>: Error
while printing exception. ABORT: r6rs:exception


Since the project I am working is open-source, the code that is causing
this issue can be found here
<https://github.com/MOZI-AI/annotation-scheme/blob/master/functions/parser.scm>.
I am more than happy to give more info if required

—

Regards,

Abdulrahman Semrie


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