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02/02: gnu: flexbar: Enable tests.
From: |
Ricardo Wurmus |
Subject: |
02/02: gnu: flexbar: Enable tests. |
Date: |
Mon, 27 Apr 2015 13:12:54 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 4ca009c03674529fbeb85aa559f867364845fe0b
Author: Ricardo Wurmus <address@hidden>
Date: Mon Apr 27 11:48:00 2015 +0200
gnu: flexbar: Enable tests.
* gnu/packages/bioinformatics.scm (flexbar): Enable tests.
---
gnu/packages/bioinformatics.scm | 15 ++++++++++-----
1 files changed, 10 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index ccfda62..bcb7eba 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -623,15 +623,20 @@ results. The FASTX-Toolkit tools perform some of these
preprocessing tasks.")
"13jaykc3y1x8y5nn9j8ljnb79s5y51kyxz46hdmvvjj6qhyympmf"))))
(build-system cmake-build-system)
(arguments
- `(;; There is no test target, although there is a directory containing
- ;; test data and scripts (launched by flexbar_validate.sh).
- #:tests? #f
- #:configure-flags (list
+ `(#:configure-flags (list
(string-append "-DFLEXBAR_BINARY_DIR="
(assoc-ref %outputs "out")
"/bin/"))
#:phases
- (alist-delete 'install %standard-phases)))
+ (alist-replace
+ 'check
+ (lambda* (#:key outputs #:allow-other-keys)
+ (setenv "PATH" (string-append
+ (assoc-ref outputs "out") "/bin:"
+ (getenv "PATH")))
+ (chdir "../flexbar_v2.5_src/test")
+ (zero? (system* "bash" "flexbar_validate.sh")))
+ (alist-delete 'install %standard-phases))))
(inputs
`(("tbb" ,tbb)
("zlib" ,zlib)))