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11/36: gnu: Add AnnotationDbi.
From: |
Ricardo Wurmus |
Subject: |
11/36: gnu: Add AnnotationDbi. |
Date: |
Thu, 07 Jan 2016 16:19:07 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 8b7bce740d507d544b6634b0f60be9450b36c5fc
Author: Ricardo Wurmus <address@hidden>
Date: Fri Dec 18 14:06:28 2015 +0100
gnu: Add AnnotationDbi.
* gnu/packages/bioinformatics.scm (r-annotationdbi): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 files changed, 27 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 54fc051..9577f71 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -3488,6 +3488,33 @@ manipulating genomic intervals and variables defined
along a genome.")
on Bioconductor or which replace R functions.")
(license license:artistic2.0)))
+(define-public r-annotationdbi
+ (package
+ (name "r-annotationdbi")
+ (version "1.32.2")
+ (source (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "AnnotationDbi" version))
+ (sha256
+ (base32
+ "08ncdjvq0l44kqyiv32kn9wnbw1xgfb6qjfzfbjpqrcfp1jygz9j"))))
+ (properties
+ `((upstream-name . "AnnotationDbi")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-dbi" ,r-dbi)
+ ("r-iranges" ,r-iranges)
+ ("r-rsqlite" ,r-rsqlite)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "http://bioconductor.org/packages/AnnotationDbi")
+ (synopsis "Annotation database interface")
+ (description
+ "This package provides user interface and database connection code for
+annotation data packages using SQLite data storage.")
+ (license license:artistic2.0)))
+
(define-public r-qtl
(package
(name "r-qtl")
- 13/36: gnu: Add BiocParallel., (continued)
- 13/36: gnu: Add BiocParallel., Ricardo Wurmus, 2016/01/07
- 15/36: gnu: Add Rsamtools., Ricardo Wurmus, 2016/01/07
- 18/36: gnu: Add rtracklayer., Ricardo Wurmus, 2016/01/07
- 09/36: gnu: Add snow., Ricardo Wurmus, 2016/01/07
- 08/36: gnu: Add futile.logger., Ricardo Wurmus, 2016/01/07
- 14/36: gnu: Add Biostrings., Ricardo Wurmus, 2016/01/07
- 03/36: gnu: Add RSQLite., Ricardo Wurmus, 2016/01/07
- 21/36: gnu: Add SparseM., Ricardo Wurmus, 2016/01/07
- 17/36: gnu: Add GenomicAlignments., Ricardo Wurmus, 2016/01/07
- 12/36: gnu: Add biomaRt., Ricardo Wurmus, 2016/01/07
- 11/36: gnu: Add AnnotationDbi.,
Ricardo Wurmus <=
- 06/36: gnu: Add lambda.r., Ricardo Wurmus, 2016/01/07
- 20/36: gnu: Add GO.db., Ricardo Wurmus, 2016/01/07
- 16/36: gnu: Add SummarizedExperiment., Ricardo Wurmus, 2016/01/07
- 27/36: gnu: Add R.cache., Ricardo Wurmus, 2016/01/07
- 28/36: gnu: Add R.rsp., Ricardo Wurmus, 2016/01/07
- 23/36: gnu: Add base64enc., Ricardo Wurmus, 2016/01/07
- 26/36: gnu: Add R.utils., Ricardo Wurmus, 2016/01/07
- 05/36: gnu: Add r-xml., Ricardo Wurmus, 2016/01/07
- 10/36: gnu: Add Biobase., Ricardo Wurmus, 2016/01/07
- 33/36: gnu: Add BSgenome., Ricardo Wurmus, 2016/01/07