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01/02: gnu: Add python-twobitreader.
From: |
Ricardo Wurmus |
Subject: |
01/02: gnu: Add python-twobitreader. |
Date: |
Tue, 19 Apr 2016 10:16:09 +0000 |
rekado pushed a commit to branch master
in repository guix.
commit 4db9433aa02ced6112170a6815377be3da6d2ef9
Author: Ricardo Wurmus <address@hidden>
Date: Wed Apr 6 16:34:19 2016 +0200
gnu: Add python-twobitreader.
* gnu/packages/bioinformatics.scm (python-twobitreader,
python2-twobitreader): New variables.
---
gnu/packages/bioinformatics.scm | 28 ++++++++++++++++++++++++++++
1 files changed, 28 insertions(+), 0 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index b76aadc..bcb2757 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -922,6 +922,34 @@ also includes an interface for tabix.")
(define-public python2-pysam
(package-with-python2 python-pysam))
+(define-public python-twobitreader
+ (package
+ (name "python-twobitreader")
+ (version "3.1.2")
+ (source (origin
+ (method url-fetch)
+ (uri (pypi-uri "twobitreader" version))
+ (sha256
+ (base32
+ "0y408fp6psqzwxpcpqn0wp7fr41dwz8d54wpj6j261fj5q8vs169"))))
+ (properties `((python2-variant . ,(delay python2-twobitreader))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-sphinx" ,python-sphinx)))
+ (home-page "https://github.com/benjschiller/twobitreader")
+ (synopsis "Python library for reading .2bit files")
+ (description
+ "twobitreader is a Python library for reading .2bit files as used by the
+UCSC genome browser.")
+ (license license:artistic2.0)))
+
+(define-public python2-twobitreader
+ (let ((base (package-with-python2 (strip-python2-variant
python-twobitreader))))
+ (package
+ (inherit base)
+ (native-inputs `(("python2-setuptools" ,python2-setuptools)
+ ,@(package-native-inputs base))))))
+
(define-public cd-hit
(package
(name "cd-hit")