branch core-updates updated (1bb163b -> e309c75)

[Andreas Enge]

andreas pushed a change to branch core-updates
in repository guix.

      from  1bb163b   gnu: address@hidden: Delete faulty test on mips64el only.
      adds  97c8aef   system: Add mapped devices for RAID.
      adds  95af24a   gnu: guix: Update development snapshot.
      adds  4a8c35e   gnu: pyqt: Add versions based on non-modular Qt 5.5.
      adds  0e5f606   gnu: calibre: Build with non-modular Qt.
      adds  de348a0   gnu: linux-libre: Update to 4.7.
      adds  ca80985   gnu: address@hidden: Update to 4.1.28.
      adds  af7aaae   gnu: Add perceptualdiff.
      adds  2b76f13   gnu: Add haveged.
      adds  88a8ce8   gnu: icecat: Install icons.
      adds  6e42660   doc: Better illustration use of package revision numbers.
      adds  debc636   doc: Explain authentication in "System Installation".
      adds  8173cee   import: pypi: Correctly handle new-style URLs.
      adds  2018552   environment: Set 'GUIX_ENVIRONMENT' to the profile.
      adds  9e90fc7   profiles: Output in 'package->manifest-entry' defaults to 
"out".
      adds  90c2ee8   gnu: Add perl-db-file.
      adds  d3896fc   gnu: dmd: Remove package, superseded by shepherd.
      adds  ae83dcf   gnu: gmime: Remove 'gpg' to 'gpg2' substitution.
      adds  42ff54d   gnu: Add missing copyright symbol.
      adds  82ee141   gnu: Add httping.
      adds  46bd451   gnu: magit: Fix rebase commands that require perl.
      adds  d00240c   zlib: Clarify when 'gzread!' can return zero.
      adds  688ec13   zlib: Protect against non-empty port internal buffers.
      adds  37402ec   tests: Use unbuffered input ports when decompressing from 
'guix publish'.
      adds  fd6830b   gnu: guix: Update revision number in version.
      adds  12c8f21   gnu: diamond: Update to 0.8.16.
      adds  9712ef8   gnu: krona-tools: Update to 2.7.
      adds  cad7e6a   system: Source /etc/environment before 
$HOME/.guix-profile/etc/profile.
      adds  b111bdb   gnu: calibre: Update to 2.63.0.
      adds  ff7172f   gnu: mariadb: Update to 10.1.16.
      adds  8e5d8b1   gnu: imagemagick: Update to 6.9.5-3.
      adds  46e4e84   gnu: the-silver-searcher: Update to 0.32.0.
      adds  e335b82   gnu: mysql: Update to 5.7.13 [fixes 
CVE-2016-{3477,3521,3615,5440}].
       new  e309c75   Merge remote-tracking branch 'origin/master' into 
core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile.am                                        |    4 +-
 doc/guix.texi                                      |  158 +++++++++++++------
 gnu/local.mk                                       |    1 +
 gnu/packages/admin.scm                             |   40 -----
 gnu/packages/bioinformatics.scm                    |    4 +-
 gnu/packages/code.scm                              |    4 +-
 gnu/packages/databases.scm                         |   41 ++++-
 gnu/packages/ebook.scm                             |   20 ++-
 gnu/packages/emacs.scm                             |   10 +-
 gnu/packages/gnuzilla.scm                          |   17 +-
 gnu/packages/image.scm                             |   32 ++++
 gnu/packages/imagemagick.scm                       |    4 +-
 ...bre-4.6-i686.conf => linux-libre-4.7-i686.conf} |  145 +++++++++++++----
 ...4.6-x86_64.conf => linux-libre-4.7-x86_64.conf} |  164 +++++++++++++++-----
 gnu/packages/linux.scm                             |   38 ++++-
 gnu/packages/mail.scm                              |    7 +-
 gnu/packages/networking.scm                        |   38 ++++-
 gnu/packages/package-management.scm                |    6 +-
 gnu/packages/patches/calibre-drop-unrar.patch      |   48 +++---
 gnu/packages/patches/mysql-fix-failing-test.patch  |   57 +++++++
 gnu/packages/qt.scm                                |   27 ++++
 gnu/packages/web.scm                               |   32 ++--
 gnu/system.scm                                     |   21 +--
 gnu/system/mapped-devices.scm                      |   29 +++-
 guix/import/pypi.scm                               |   13 +-
 guix/profiles.scm                                  |   11 +-
 guix/scripts/environment.scm                       |    5 +-
 guix/zlib.scm                                      |   23 ++-
 tests/guix-environment.sh                          |    4 +
 tests/profiles.scm                                 |   10 ++
 tests/publish.scm                                  |   12 +-
 tests/pypi.scm                                     |   16 ++
 32 files changed, 770 insertions(+), 271 deletions(-)
 rename gnu/packages/{linux-libre-4.6-i686.conf => linux-libre-4.7-i686.conf} 
(98%)
 rename gnu/packages/{linux-libre-4.6-x86_64.conf => 
linux-libre-4.7-x86_64.conf} (98%)
 create mode 100644 gnu/packages/patches/mysql-fix-failing-test.patch