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23/49: gnu: r-variantannotation: Update to 1.20.0.
From: |
Ricardo Wurmus |
Subject: |
23/49: gnu: r-variantannotation: Update to 1.20.0. |
Date: |
Wed, 26 Oct 2016 07:29:05 +0000 (UTC) |
rekado pushed a commit to branch master
in repository guix.
commit 37d96f1ddee6c25bb8b6a7c600c32454eabcdd82
Author: Ricardo Wurmus <address@hidden>
Date: Wed Oct 26 08:54:23 2016 +0200
gnu: r-variantannotation: Update to 1.20.0.
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to
1.20.0.
[propagated-inputs]: Add r-biobase, r-biostrings, r-iranges,
r-rtracklayer, r-s4vectors, r-xvector.
---
gnu/packages/bioinformatics.scm | 10 ++++++++--
1 file changed, 8 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1181058..058bbae 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -6188,27 +6188,33 @@ CAGE.")
(define-public r-variantannotation
(package
(name "r-variantannotation")
- (version "1.18.7")
+ (version "1.20.0")
(source (origin
(method url-fetch)
(uri (bioconductor-uri "VariantAnnotation" version))
(sha256
(base32
- "002kif2c66wbcng953m3g1jys7w1lgz7hh3zsk4jlnhc20jdv1vj"))))
+ "1lwzfgahz8ipwli73kcfqb18y6adi129hap1gnycnj3980m54i8q"))))
(properties
`((upstream-name . "VariantAnnotation")))
(inputs
`(("zlib" ,zlib)))
(propagated-inputs
`(("r-annotationdbi" ,r-annotationdbi)
+ ("r-biobase" ,r-biobase)
("r-biocgenerics" ,r-biocgenerics)
+ ("r-biostrings" ,r-biostrings)
("r-bsgenome" ,r-bsgenome)
("r-dbi" ,r-dbi)
("r-genomeinfodb" ,r-genomeinfodb)
("r-genomicfeatures" ,r-genomicfeatures)
("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
("r-summarizedexperiment" ,r-summarizedexperiment)
("r-rsamtools" ,r-rsamtools)
+ ("r-rtracklayer" ,r-rtracklayer)
+ ("r-s4vectors" ,r-s4vectors)
+ ("r-xvector" ,r-xvector)
("r-zlibbioc" ,r-zlibbioc)))
(build-system r-build-system)
(home-page "https://bioconductor.org/packages/VariantAnnotation")
- 16/49: gnu: r-biocgenerics: Update to 0.20.0., (continued)
- 16/49: gnu: r-biocgenerics: Update to 0.20.0., Ricardo Wurmus, 2016/10/26
- 19/49: gnu: r-s4vectors: Update to 0.12.0., Ricardo Wurmus, 2016/10/26
- 12/49: gnu: r-gostats: Update to 2.40.0., Ricardo Wurmus, 2016/10/26
- 24/49: gnu: r-limma: Update to 3.30.0., Ricardo Wurmus, 2016/10/26
- 31/49: gnu: r-biostrings: Update to 2.42.0., Ricardo Wurmus, 2016/10/26
- 18/49: gnu: r-dnacopy: Update to 1.48.0., Ricardo Wurmus, 2016/10/26
- 22/49: gnu: r-edger: Update to 3.16.0., Ricardo Wurmus, 2016/10/26
- 29/49: gnu: r-biomart: Update to 2.30.0., Ricardo Wurmus, 2016/10/26
- 21/49: gnu: r-genomeinfodb: Update to 1.10.0., Ricardo Wurmus, 2016/10/26
- 07/49: gnu: r-deseq2: Update to 1.14.0., Ricardo Wurmus, 2016/10/26
- 23/49: gnu: r-variantannotation: Update to 1.20.0.,
Ricardo Wurmus <=
- 11/49: gnu: r-category: Update to 2.40.0., Ricardo Wurmus, 2016/10/26
- 14/49: gnu: r-systempiper: Update to 1.8.1., Ricardo Wurmus, 2016/10/26
- 15/49: gnu: r-grohmm: Update to 1.8.0., Ricardo Wurmus, 2016/10/26
- 30/49: gnu: r-biocparallel: Update to 1.8.0., Ricardo Wurmus, 2016/10/26
- 20/49: gnu: r-iranges: Update to 2.8.0., Ricardo Wurmus, 2016/10/26
- 26/49: gnu: r-genomicranges: Update to 1.26.1., Ricardo Wurmus, 2016/10/26
- 33/49: gnu: r-summarizedexperiment: Update to 1.4.0., Ricardo Wurmus, 2016/10/26
- 41/49: gnu: r-impute: Update to 1.48.0., Ricardo Wurmus, 2016/10/26
- 32/49: gnu: r-rsamtools: Update to 1.26.1., Ricardo Wurmus, 2016/10/26
- 37/49: gnu: r-go-db: Update to 3.4.0., Ricardo Wurmus, 2016/10/26