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01/01: update_bowtie
From: |
Ben Woodcroft |
Subject: |
01/01: update_bowtie |
Date: |
Sun, 23 Jul 2017 18:45:55 -0400 (EDT) |
benwoodcroft pushed a commit to branch bowtie-update
in repository guix.
commit ce39eaeb360dcc59900b3c921e9148cbf0dc43b7
Author: Ben J Woodcroft <address@hidden>
Date: Mon Jul 24 08:45:30 2017 +1000
update_bowtie
---
gnu/packages/bioinformatics.scm | 18 ++++++++++--------
1 file changed, 10 insertions(+), 8 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 82cd1e4..a9f6259 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1195,7 +1195,7 @@ errors at the end of reads.")
(define-public bowtie
(package
(name "bowtie")
- (version "2.2.9")
+ (version "2.3.2")
(source (origin
(method url-fetch)
(uri (string-append
"https://github.com/BenLangmead/bowtie2/archive/v"
@@ -1203,7 +1203,7 @@ errors at the end of reads.")
(file-name (string-append name "-" version ".tar.gz"))
(sha256
(base32
- "1vp5db8i7is57iwjybcdg18f5ivyzlj5g1ix1nlvxainzivhz55g"))
+ "0hwa5r9qbglppb7sz5z79rlmmddr3n51n468jb3wh8rwjgn3yr90"))
(modules '((guix build utils)))
(snippet
'(substitute* "Makefile"
@@ -1211,12 +1211,14 @@ errors at the end of reads.")
(("-DBUILD_HOST=.*") "-DBUILD_HOST=\"\\\"guix\\\"\"")
(("-DBUILD_TIME=.*") "-DBUILD_TIME=\"\\\"0\\\"\"")))))
(build-system gnu-build-system)
- (inputs `(("perl" ,perl)
- ("perl-clone" ,perl-clone)
- ("perl-test-deep" ,perl-test-deep)
- ("perl-test-simple" ,perl-test-simple)
- ("python" ,python-2)
- ("tbb" ,tbb)))
+ (inputs
+ `(("perl" ,perl)
+ ("perl-clone" ,perl-clone)
+ ("perl-test-deep" ,perl-test-deep)
+ ("perl-test-simple" ,perl-test-simple)
+ ("python" ,python-2)
+ ("tbb" ,tbb)
+ ("zlib" ,zlib)))
(arguments
'(#:make-flags
(list "allall"