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32/39: gnu: Add r-fastseg.

From: Ricardo Wurmus
Subject: 32/39: gnu: Add r-fastseg.
Date: Thu, 17 Aug 2017 11:27:37 -0400 (EDT)

rekado pushed a commit to branch master
in repository guix.

commit d4a1e918cbbc583bf626bda44bbb862bca8e9265
Author: Ricardo Wurmus <address@hidden>
Date:   Tue Aug 15 15:11:45 2017 +0200

    gnu: Add r-fastseg.
    * gnu/packages/bioinformatics.scm (r-fastseg): New variable.
 gnu/packages/bioinformatics.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 56f2d5d..5dbf2ce 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -9289,6 +9289,36 @@ modification.  The client creates and manages a local 
cache of files retrieved
 by the user, helping with quick and reproducible access.")
     (license license:artistic2.0)))
+(define-public r-fastseg
+  (package
+    (name "r-fastseg")
+    (version "1.22.0")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (bioconductor-uri "fastseg" version))
+       (sha256
+        (base32
+         "083wiz03q9mynwchs9frlpp6c84dncri5ncibx6h82p228cpja6h"))))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-biobase" ,r-biobase)
+       ("r-biocgenerics" ,r-biocgenerics)
+       ("r-genomicranges" ,r-genomicranges)
+       ("r-iranges" ,r-iranges)
+       ("r-s4vectors" ,r-s4vectors)))
+    (home-page "";)
+    (synopsis "Fast segmentation algorithm for genetic sequencing data")
+    (description
+     "Fastseg implements a very fast and efficient segmentation algorithm.
+It can segment data from DNA microarrays and data from next generation
+sequencing for example to detect copy number segments.  Further it can segment
+data from RNA microarrays like tiling arrays to identify transcripts.  Most
+generally, it can segment data given as a matrix or as a vector.  Various data
+formats can be used as input to fastseg like expression set objects for
+microarrays or GRanges for sequencing data.")
+    (license license:lgpl2.0+)))
 (define htslib-for-sambamba
   (let ((commit "2f3c3ea7b301f9b45737a793c0b2dcf0240e5ee5"))

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