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branch staging updated (c651cba -> 7716ccd)


From: Marius Bakke
Subject: branch staging updated (c651cba -> 7716ccd)
Date: Wed, 4 Oct 2017 18:46:53 -0400 (EDT)

mbakke pushed a change to branch staging
in repository guix.

      from  c651cba   gnu: eudev: Update to 3.2.4 and generate manpages.
       new  86edcc5   Revert "gnu: eudev: Update to 3.2.4 and generate 
manpages."
      adds  bf7bc0d   gnu: Add ocaml-ezjsonm.
      adds  3dabefe   gnu: Add ocaml-uri.
      adds  6134aeb   gnu: Add ocaml-easy-format.
      adds  b5c0217   gnu: Add ocaml-optcomp.
      adds  9c5dbbf   gnu: Add ocaml-piqilib.
      adds  88b1533   gnu: Add ocaml-uuidm.
      adds  8a23818   gnu: Add ocaml-graph.
      adds  fc3d70a   gnu: Add ocaml-piqi.
      adds  cd1562e   gnu: Add bap.
      adds  408091d   gnu: Add ocaml-camomile.
      adds  66bc1d2   cuirass: Add gnu-system build spec.
      adds  516b538   cuirass: Support subset with list of address@hidden
      adds  57b1466   gnu: Add gnome-todo.
      adds  42ecb96   gnu: Add font-rachana.
      adds  4cb87d6   gnu: libgc: Add 'libgc-back-pointers' variant.
      adds  523ecbb   gnu: libical: Fix libdir install path.
      adds  68a91a1   import: Add package->code.
      adds  5e892bc   import: Add generic data to package converter.
      adds  fb1db38   import: Add JSON importer.
      adds  50cb3c8   gnu: Add dino.
      adds  0423131   gnu: qtmultimedia: Build gstreamer backend.
      adds  2da8865   gnu: libjaylink: Update to commit 699b700.
      adds  ea1aa45   gnu: openocd: Update to 0.10.0
      adds  a6edcfa   gnu: Add asco.
      adds  07f80c2   guix: Revert accidentally committed changes.
      adds  454caca   cuirass: Add 'cuirass-jobs.scm' target to compute the 
Cuirass jobs.
      adds  060348d   gnu: Add emacs-tablist.
      adds  1210046   gnu: emacs-pdf-tools: Update to 0.80.
      adds  9c074e8   gnu: dunst: Update to 1.2.0.
      adds  41342e8   gnu: lirc: Update to 0.10.1.
      adds  69b498a   gnu: Add emacs-sr-speedbar.
      adds  8fc559d   gnu: Add emacs-jinja2-mode.
      adds  ac71346   gnu: Add cadaver.
      adds  1344deb   gnu: r-minimal: Update to 3.4.2.
      adds  18a26f1   gnu: Add footswitch.
      adds  025b196   gnu: python-numpy: Update to 1.13.1.
      adds  80c3f4d   gnu: python-ipython: Update to 5.3.0.
      adds  4d14808   services: web: Add try-files for the nginx-service-type.
      adds  2c49184   gnu: r-backports: Update to 1.1.1.
      adds  7147d8f   gnu: r-checkmate: Update to 1.8.4.
      adds  26cd419   gnu: r-doparallel: Update to 1.0.11.
      adds  6048986   gnu: r-lme4: Update to 1.1-14.
      adds  d311292   gnu: r-rcpp: Update to 0.12.13.
      adds  7ef9e14   gnu: r-lava: Update to 1.5.1.
      adds  e90456b   gnu: r-ddalpha: Update to 1.3.1.
      adds  2ca147b   gnu: wireshark: Update to 2.4.1.
      adds  00b0d0e   gnu: address@hidden: Update to 4.4.89.
      adds  e604c02   gnu: address@hidden: Update to 4.9.52.
      adds  94c6865   gnu: linux-libre: Update to 4.13.4.
      adds  bc01c89   gnu: tclxml: Propagate tcllib.
      adds  1501cb5   gnu: cuirass: Update to latest snapshot.
      adds  3fd2f86   gnu: icecat: Rename patches to reflect CVE assignments.
      adds  464a288   gnu: icecat: Add more fixes from upstream mozilla-esr52.
      adds  dee9a26   gnu: openvpn: Update to 2.4.4.
      adds  41a1ac1   gnu: php: Update to 7.1.10.
      adds  6fc35b2   gnu: knot: Update to 2.5.5.
      adds  16818c4   gnu: libfilezilla: Update to 0.11.0.
      adds  6e79949   gnu: Add xautomation.
      adds  1c8e6fd   gnu: Add ruby-httpclient.
      adds  9a97e7c   gnu: Add ruby-multi-json.
      adds  cef87ed   gnu: Add ruby-options.
      adds  9b4c8e1   gnu: Add ruby-code-statistics.
      adds  823ed09   gnu: Add ruby-highline.
      adds  268643b   gnu: Add ruby-progress_bar.
      adds  cb6bc5d   gnu: Add ruby-rubyzip.
      adds  afcbb02   gnu: Add ruby-es-dump-restore.
      adds  9cb928a   gnu: synthv1: Update to 0.8.4.
      adds  f7a99e2   gnu: drumkv1: Update to 0.8.4.
      adds  fba1cad   gnu: samplv1: Update to 0.8.4.
      adds  0083a39   gnu: guitarix: Update to 0.35.6.
      adds  58b2835   gnu: pybitmessage: Update to 0.6.2.
      adds  350cc3a   doc: Fix rottlog configuration sample code.
      adds  65fff6a   gnu: Add emacs-cnfonts.
      adds  0fa8a93   gnu: Add emacs-pyim-basedict.
      adds  9f3b27a   gnu: Add emacs-pos-tip.
      adds  7493306   gnu: Add emacs-pyim.
      adds  2003090   gnu: libreoffice: Update to 5.3.6.1.
      adds  5b9aa10   gnu: gnutls: Add 'gnutls-dane'.
      adds  fd67e3a   gnu: gnurl: Use 'gnutls/dane' as input.
      adds  1472f63   gnu: libmicrohttpd: Use 'gnutls/dane' as input.
      adds  6a5f7af   gnu: gnunet: Use 'gnutls/dane' as input.
      adds  88e6086   gnu: emacs-cyberpunk-theme: Update to 1.19.
      adds  32e23ab   gnu: emacs-visual-fill-column: Update to 1.11.
      adds  0ef1c22   gnu: Add emacs-writeroom.
      adds  710cc1a   gnu: Add libngspice and ngspice.
      adds  e153362   gnu: youtube-dl: Update to 2017.10.01.
      adds  ce7393f   gnu: knot: update to 2.6.0.
      adds  0e42d23   gnu: tor: Update to 0.3.1.7.
      adds  a49d3e3   gnu: gnome-calendar: Update to 3.26.1.
      adds  99e28bb   gnu: tilda: Use glib-or-gtk build system.
      adds  08d9784   gnu: autoconf-archive: Update to 2017.09.28.
      adds  c835503   gnu: ruby-method-source: Update to 0.9.0.
      adds  1960d4f   gnu: ruby-pry: Update to 0.11.1.
      adds  76dd04b   gnu: dnsmasq: Update to 2.78 [Security fixes].
      adds  ab7f51f   gnu: Add python-pydiff.
      adds  8e483fb   gnu: python-autopep8: Update to 1.3.2.
      adds  30d7207   gnu: python-requests-toolbelt: Update to 0.8.0.
      adds  74e9895   gnu: Add python2-requests-toolbelt.
      adds  9bb7c05   gnu: python-tox: Update to 2.8.1.
      adds  8e6ceb4   gnu: Add python-nose-timer.
      adds  cf47e34   gnu: Update the propagated inputs of python-urllib3.
      adds  b84ef9e   gnu: Add python-tqdm.
      adds  78f46e6   gnu: Add python-pkginfo.
      adds  3ef85c1   gnu: Add python-twine.
      adds  61ce099   gnu: Add virtuoso-ose.
      adds  1ba940b   gnu: vdirsyncer: Update to 0.16.3.
      adds  df71c88   gnu: Add pulsemixer.
      adds  e797e94   doc: Explain why synopses/descriptions must be literal 
strings.
      adds  032a276   gnu: services: Add cgit.
      adds  d109b1e   Update e-mail for Theodoros Foradis.
      adds  0ad03ea   gnu: android: Add android-udev-rules package.
      adds  65d9890   gnu: cflow: Fix preprocess option.
      adds  6a3af24   gnu: Add papi.
      adds  a6121c0   gnu: Add otf2.
      adds  3c8d1f9   gnu: Add opari2.
      adds  a66408f   gnu: Add cube.
      adds  fb99371   gnu: Add scorep-openmpi.
      adds  c971d9e   gnu: openmpi: Add "debug" output.
      adds  0750cf7   gnu: mgba: Update to 0.6.1.
      adds  3d7a159   gnu: qtox: Update to 1.12.0.
      adds  4d6801b   gnu: graphicsmagick: Fix CVE-2017-14649.
      adds  8df1faa   guix: ant-build-system: Add main-class support.
      adds  f403d7a   guix: ant-build-system: Add #:test-include and 
#:test-exclude arguments.
      adds  30deade   gnu: Add java-microemulator-cldc.
      adds  8e2f3e5   gnu: Add java-datanucleus-javax-persistence.
      adds  3240ddb   gnu: Add java-osgi-cmpn.
      adds  747c757   gnu: Add java-osgi-service-component-annotations.
      adds  999b5fb   gnu: Add java-osgi-dto.
      adds  c304ce6   gnu: Add java-osgi-resource.
      adds  c2b1451   gnu: Add java-osgi-namespace-contract.
      adds  f809c96   gnu: Add java-osgi-namespace-extender.
      adds  b784962   gnu: Add java-osgi-namespace-service.
      adds  0f0c521   gnu: Add java-osgi-util-function.
      adds  2710313   gnu: Add java-osgi-util-promise.
      adds  2b1fdb2   gnu: Add java-osgi-service-metatype-annotations.
      adds  a13acfb   gnu: Add java-osgi-service-repository.
      adds  dfd9154   gnu: Add java-osgi-framework.
      adds  98c9f16   gnu: Add java-osgi-service-log.
      adds  dd76d44   gnu: Add java-osgi-service-jdbc.
      adds  291d3f2   gnu: Add java-osgi-service-resolver.
      adds  1884bb8   gnu: Add java-osgi-util-tracker.
      adds  fb9c48b   gnu: Add java-osgi-service-cm.
      adds  500aac7   gnu: Add java-osgi-service-packageadmin.
      adds  f282aa5   gnu: Add heimdall.
      adds  2299f5c   gnu: python-nose-timer: Add missing patch.
      adds  79ed92b   gnu: libsodium: Update to 1.0.15.
      adds  2a6e049   gnu: p11-kit: Update to 0.23.9.
      adds  87a9c53   gnu: imagemagick: Update to 6.9.9-17.
      adds  f9bd205   gnu: qemu: Update to 2.10.1.
      adds  71977ab   gnu: vte-ng: Update to 0.50.0.a.
      adds  072acc6   gnu: openssh: Update to 7.6p1.
      adds  7e2c67c   gnu: awscli: Update to 1.11.164.
      adds  d0c8e52   gnu: Add snd.
      adds  0c75a4d   vm: Add a minimum root size.
      adds  eb15207   vm: Add disk-image-size to <virtual-machine>.
      adds  fa4f95a   gnu: Standardise indentation of finance module imports.
      adds  f473b8f   gnu: clisp: Update to 2.49-60.
      adds  d2f93e6   gnu: emacs-slime: Update to 2.20.
      adds  6fe2d37   gnu: emacs-pyim: Fix error input name
      adds  48b68c6   gnu: virtuoso-ose: Limit to 64-bit platforms.
      adds  1033cdb   gnu: python-numpy: Give sh store location instead of 
setting $SHELL.
      adds  cb91ede   gnu: python-numexpr: Update to 2.6.4.
      adds  63aa855   gnu: Add python-parameterized.
      adds  4949023   gnu: isync: Update to 1.3.0.
      adds  f120b4a   gnu: mutt: Update to 1.9.1.
      adds  a35532f   gnu: xorg-server: Update to 1.19.4 [fixes CVE-2017-13721, 
CVE-2017-13723].
       new  7716ccd   Merge branch 'master' into staging

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .mailmap                                           |   1 +
 Makefile.am                                        |  13 +
 build-aux/cuirass/gnu-system.scm                   |  47 ++
 build-aux/hydra/evaluate.scm                       |  13 +-
 build-aux/hydra/gnu-system.scm                     |  19 +
 doc/guix.texi                                      | 155 +++++-
 gnu/local.mk                                       |  11 +-
 gnu/packages/accessibility.scm                     |  45 +-
 gnu/packages/android.scm                           |  38 ++
 gnu/packages/aspell.scm                            |   2 +-
 gnu/packages/audio.scm                             |  66 ++-
 gnu/packages/autotools.scm                         |   5 +-
 gnu/packages/bdw-gc.scm                            |  12 +-
 gnu/packages/calendar.scm                          |   7 +-
 gnu/packages/check.scm                             |  24 +
 gnu/packages/ci.scm                                |  17 +-
 gnu/packages/code.scm                              |   6 +-
 gnu/packages/compression.scm                       |   2 +-
 gnu/packages/cran.scm                              |  17 +-
 gnu/packages/crypto.scm                            |   4 +-
 gnu/packages/databases.scm                         |  70 ++-
 gnu/packages/dav.scm                               |   5 +-
 gnu/packages/dns.scm                               |  10 +-
 gnu/packages/dunst.scm                             |  17 +-
 gnu/packages/electronics.scm                       |   2 +-
 gnu/packages/emacs.scm                             | 199 +++++++-
 gnu/packages/embedded.scm                          | 119 +++--
 gnu/packages/engineering.scm                       | 154 +++++-
 gnu/packages/finance.scm                           |  62 +--
 gnu/packages/flashing-tools.scm                    |  67 ++-
 gnu/packages/fonts.scm                             |  27 +
 gnu/packages/fpga.scm                              |   2 +-
 gnu/packages/ftp.scm                               |   4 +-
 gnu/packages/games.scm                             |   4 +-
 gnu/packages/gnome.scm                             |  76 ++-
 gnu/packages/gnunet.scm                            |   6 +-
 gnu/packages/gnuzilla.scm                          |  28 +-
 gnu/packages/graphviz.scm                          |   2 +-
 gnu/packages/guile.scm                             |   2 +-
 gnu/packages/imagemagick.scm                       |   7 +-
 gnu/packages/java.scm                              | 564 +++++++++++++++++++++
 gnu/packages/libreoffice.scm                       |   4 +-
 gnu/packages/libusb.scm                            |   2 +-
 gnu/packages/linux.scm                             |  62 +--
 gnu/packages/lirc.scm                              |  14 +-
 gnu/packages/lisp.scm                              |  32 +-
 gnu/packages/mail.scm                              |  10 +-
 gnu/packages/maths.scm                             |   2 +-
 gnu/packages/messaging.scm                         | 132 +++--
 gnu/packages/mpi.scm                               |   1 +
 gnu/packages/music.scm                             |  12 +-
 gnu/packages/networking.scm                        |   4 +-
 gnu/packages/ocaml.scm                             | 351 +++++++++++++
 .../patches/clisp-remove-failing-test.patch        |  43 ++
 gnu/packages/patches/cube-nocheck.patch            |  16 +
 .../patches/graphicsmagick-CVE-2017-14649.patch    | 210 ++++++++
 .../ocaml-graph-honor-source-date-epoch.patch      |  34 ++
 gnu/packages/patches/openocd-nrf52.patch           |  64 +--
 .../python-nose-timer-drop-ordereddict.patch       |  44 ++
 gnu/packages/patches/qemu-CVE-2017-13711.patch     |  89 ----
 gnu/packages/patches/qemu-CVE-2017-14167.patch     |  69 ---
 .../patches/xorg-server-CVE-2017-10971.patch       | 153 ------
 .../patches/xorg-server-CVE-2017-10972.patch       |  35 --
 gnu/packages/php.scm                               |   4 +-
 gnu/packages/profiling.scm                         | 399 +++++++++++++++
 gnu/packages/pulseaudio.scm                        |  31 ++
 gnu/packages/python.scm                            | 194 ++++++-
 gnu/packages/qt.scm                                |  16 +-
 gnu/packages/ruby.scm                              | 229 ++++++++-
 gnu/packages/ssh.scm                               |   4 +-
 gnu/packages/statistics.scm                        |  20 +-
 gnu/packages/tcl.scm                               |   3 +-
 gnu/packages/terminals.scm                         |   9 +-
 gnu/packages/tls.scm                               |  18 +-
 gnu/packages/tor.scm                               |   4 +-
 gnu/packages/uml.scm                               |   2 +-
 gnu/packages/video.scm                             |   4 +-
 gnu/packages/virtualization.scm                    |   6 +-
 gnu/packages/vpn.scm                               |   7 +-
 gnu/packages/web.scm                               |  34 +-
 gnu/packages/wxwidgets.scm                         |   2 +-
 gnu/packages/xdisorg.scm                           |  35 ++
 gnu/packages/xorg.scm                              |  10 +-
 gnu/services/version-control.scm                   | 119 ++++-
 gnu/services/web.scm                               |   6 +
 gnu/system/vm.scm                                  |  22 +-
 gnu/tests/version-control.scm                      | 176 +++++++
 guix/build-system/ant.scm                          |   6 +
 guix/build/ant-build-system.scm                    |  38 +-
 guix/import/print.scm                              | 164 ++++++
 guix/import/utils.scm                              |  90 +++-
 guix/scripts/import.scm                            |   2 +-
 guix/scripts/import/{cpan.scm => json.scm}         |  36 +-
 tests/import-utils.scm                             |  40 +-
 tests/print.scm                                    |  64 +++
 95 files changed, 4309 insertions(+), 799 deletions(-)
 create mode 100644 build-aux/cuirass/gnu-system.scm
 create mode 100644 gnu/packages/patches/clisp-remove-failing-test.patch
 create mode 100644 gnu/packages/patches/cube-nocheck.patch
 create mode 100644 gnu/packages/patches/graphicsmagick-CVE-2017-14649.patch
 create mode 100644 
gnu/packages/patches/ocaml-graph-honor-source-date-epoch.patch
 create mode 100644 
gnu/packages/patches/python-nose-timer-drop-ordereddict.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-13711.patch
 delete mode 100644 gnu/packages/patches/qemu-CVE-2017-14167.patch
 delete mode 100644 gnu/packages/patches/xorg-server-CVE-2017-10971.patch
 delete mode 100644 gnu/packages/patches/xorg-server-CVE-2017-10972.patch
 create mode 100644 gnu/packages/profiling.scm
 create mode 100644 gnu/tests/version-control.scm
 create mode 100644 guix/import/print.scm
 copy guix/scripts/import/{cpan.scm => json.scm} (71%)
 create mode 100644 tests/print.scm



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