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03/03: gnu: python-pandas: Update to 0.22.0.
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From: |
Marius Bakke |
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Subject: |
03/03: gnu: python-pandas: Update to 0.22.0. |
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Date: |
Fri, 9 Feb 2018 08:45:39 -0500 (EST) |
mbakke pushed a commit to branch core-updates
in repository guix.
commit ce2cfcabfccbd6062ab4029258ab61b308508c62
Author: Marius Bakke <address@hidden>
Date: Fri Feb 9 14:40:44 2018 +0100
gnu: python-pandas: Update to 0.22.0.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Delete file.
* gnu/packages/python.scm (python-pandas): Update to 0.22.0.
[source](patches): Remove.
[native-inputs]: Add PYTHON-PYTEST and PYTHON-LXML.
[arguments]: Replace CHECK-PHASE with custom pytest invocation.
[home-page]: Use HTTPS.
---
gnu/local.mk | 1 -
.../patches/python-pandas-skip-failing-tests.patch | 49 ----------------------
gnu/packages/python.scm | 38 +++++++++++++----
3 files changed, 31 insertions(+), 57 deletions(-)
diff --git a/gnu/local.mk b/gnu/local.mk
index 9cf14c8..0a7810d 100644
--- a/gnu/local.mk
+++ b/gnu/local.mk
@@ -1026,7 +1026,6 @@ dist_patch_DATA =
\
%D%/packages/patches/python-scikit-learn-fix-test-non-determinism.patch
\
%D%/packages/patches/python-configobj-setuptools.patch \
%D%/packages/patches/python-faker-fix-build-32bit.patch \
- %D%/packages/patches/python-pandas-skip-failing-tests.patch \
%D%/packages/patches/python-paste-remove-website-test.patch \
%D%/packages/patches/python-paste-remove-timing-test.patch \
%D%/packages/patches/python-pygit2-disable-network-tests.patch \
diff --git a/gnu/packages/patches/python-pandas-skip-failing-tests.patch
b/gnu/packages/patches/python-pandas-skip-failing-tests.patch
deleted file mode 100644
index 8ac330c..0000000
--- a/gnu/packages/patches/python-pandas-skip-failing-tests.patch
+++ /dev/null
@@ -1,49 +0,0 @@
-These tests fail on 32bit architectures.
-
-Upstream bug URL: https://github.com/pandas-dev/pandas/issues/14866
-
---- a/pandas/tests/indexes/common.py 2017-03-09 00:10:26.063996176 +0100
-+++ b/pandas/tests/indexes/common.py 2017-03-09 00:10:53.152844191 +0100
-@@ -119,20 +119,6 @@
- with tm.assertRaisesRegexp(ValueError, 'Invalid fill method'):
- idx.get_indexer(idx, method='invalid')
-
-- def test_ndarray_compat_properties(self):
--
-- idx = self.create_index()
-- self.assertTrue(idx.T.equals(idx))
-- self.assertTrue(idx.transpose().equals(idx))
--
-- values = idx.values
-- for prop in self._compat_props:
-- self.assertEqual(getattr(idx, prop), getattr(values, prop))
--
-- # test for validity
-- idx.nbytes
-- idx.values.nbytes
--
- def test_repr_roundtrip(self):
-
- idx = self.create_index()
---- a/pandas/tools/tests/test_tile.py 2017-03-08 17:47:39.762261841 +0100
-+++ b/pandas/tools/tests/test_tile.py 2017-03-08 17:48:26.831780495 +0100
-@@ -271,19 +271,6 @@
- np.array([0, 0, 1, 1], dtype=np.int8))
- tm.assert_numpy_array_equal(bins, np.array([0, 1.5, 3]))
-
-- def test_single_bin(self):
-- # issue 14652
-- expected = Series([0, 0])
--
-- s = Series([9., 9.])
-- result = cut(s, 1, labels=False)
-- tm.assert_series_equal(result, expected)
--
-- s = Series([-9., -9.])
-- result = cut(s, 1, labels=False)
-- tm.assert_series_equal(result, expected)
--
--
- def curpath():
- pth, _ = os.path.split(os.path.abspath(__file__))
- return pth
diff --git a/gnu/packages/python.scm b/gnu/packages/python.scm
index ac8927c..6e08e38 100644
--- a/gnu/packages/python.scm
+++ b/gnu/packages/python.scm
@@ -1066,24 +1066,48 @@ human-friendly syntax.")
(define-public python-pandas
(package
(name "python-pandas")
- (version "0.19.2")
+ (version "0.22.0")
(source
(origin
(method url-fetch)
(uri (pypi-uri "pandas" version))
(sha256
- (base32 "0540cnbwy2hc4hv2sxfs8i47xi91qzvzxfn80dl785ibiicly3vg"))
- (patches
- (search-patches "python-pandas-skip-failing-tests.patch"))))
+ (base32 "0v0fi2i10kwnmlpsl6f1fgajcpx3q6766qf6xqi5kw3ivn8l1aa4"))))
(build-system python-build-system)
+ (arguments
+ `(#:modules ((guix build utils)
+ (guix build python-build-system)
+ (ice-9 ftw)
+ (srfi srfi-26))
+ #:phases (modify-phases %standard-phases
+ (replace 'check
+ (lambda _
+ (let ((build-directory
+ (string-append
+ (getcwd) "/build/"
+ (car (scandir "build"
+ (cut string-prefix? "lib." <>))))))
+ (with-directory-excursion build-directory
+ ;; Delete tests that require "moto" which is not yet
in Guix.
+ (for-each delete-file
+ '("pandas/tests/io/conftest.py"
+
"pandas/tests/io/json/test_compression.py"
+ "pandas/tests/io/test_excel.py"))
+ (invoke "pytest" "-v" "pandas" "-k"
+ (string-append
+ "not network and not disabled"
+ ;; XXX: Due to the deleted tests above.
+ " and not test_read_s3_jsonl")))))))))
(propagated-inputs
`(("python-numpy" ,python-numpy)
("python-pytz" ,python-pytz)
("python-dateutil" ,python-dateutil)))
(native-inputs
- `(("python-nose" ,python-nose)
- ("python-cython" ,python-cython)))
- (home-page "http://pandas.pydata.org";)
+ `(("python-cython" ,python-cython)
+ ("python-lxml" ,python-lxml)
+ ("python-nose" ,python-nose)
+ ("python-pytest" ,python-pytest)))
+ (home-page "https://pandas.pydata.org";)
(synopsis "Data structures for data analysis, time series, and statistics")
(description
"Pandas is a Python package providing fast, flexible, and expressive data