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01/02: gnu: pigx-rnaseq: Disable memory hungry test.
From: |
Ricardo Wurmus |
Subject: |
01/02: gnu: pigx-rnaseq: Disable memory hungry test. |
Date: |
Fri, 16 Mar 2018 10:40:37 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit fe52a215e53514d1857131e3a75104a081e415b6
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 16 15:03:02 2018 +0100
gnu: pigx-rnaseq: Disable memory hungry test.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[arguments]: Add phase to
disable a memory hungry test.
---
gnu/packages/bioinformatics.scm | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1b49cfd..fa4a495 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -12677,6 +12677,13 @@ once. This package provides tools to perform Drop-seq
analyses.")
`(#:parallel-tests? #f ; not supported
#:phases
(modify-phases %standard-phases
+ ;; "test.sh" runs STAR, which requires excessive amounts of memory.
+ (add-after 'unpack 'disable-resource-intensive-test
+ (lambda _
+ (substitute* "Makefile.in"
+ (("(^ tests/test_trim_galore/test.sh).*" _ m) m)
+ (("^ test.sh") ""))
+ #t))
(add-after 'install 'wrap-executable
;; Make sure the executable finds all R modules.
(lambda* (#:key inputs outputs #:allow-other-keys)