branch core-updates updated (a13c1bf -> e0f8970)

[Ricardo Wurmus]

rekado pushed a change to branch core-updates
in repository guix.

      from  a13c1bf   Merge branch 'master' into core-updates
      adds  e3a87d7   self: Improve backtraces for 'imported-files'.
      adds  8031b3f   self: 'compiled-files' builds the given list of files.
      adds  1458f76   self: Include gnu/build/* in the result.
      adds  d5452aa   gnu: emacs-elfeed: Update to 3.0.0.
      adds  d22546c   gnu: r-minimal: Update to 3.5.0.
      adds  2f5b3d8   gnu: r-hpar: Update to 1.22.2.
      adds  72427c7   gnu: r-regioner: Update to 1.12.0.
      adds  45bbccf   gnu: r-diffbind: Update to 2.8.0.
      adds  43734b4   gnu: r-ripseeker: Update to 1.20.0.
      adds  f794e85   gnu: r-chippeakanno: Update to 3.14.0.
      adds  6748708   gnu: r-marray: Update to 1.58.0.
      adds  205df4a   gnu: r-cghbase: Update to 1.40.0.
      adds  5c0df20   gnu: r-cghcall: Update to 2.42.0.
      adds  81b0181   gnu: r-qdnaseq: Update to 1.16.0.
      adds  02be818   gnu: r-annotate: Update to 1.58.0.
      adds  14e9235   gnu: r-copynumber: Update to 1.20.0.
      adds  4d70c8c   gnu: r-geneplotter: Update to 1.58.0.
      adds  41657b1   gnu: r-genefilter: Update to 1.62.0.
      adds  51c1f96   gnu: r-deseq2: Update to 1.20.0.
      adds  16da69b   gnu: r-dexseq: Update to 1.26.0.
      adds  5516db9   gnu: r-annotationforge: Update to 1.22.0.
      adds  9177ac2   gnu: r-rbgl: Update to 1.56.0.
      adds  f1094f5   gnu: r-gseabase: Update to 1.42.0.
      adds  d8410d6   gnu: r-category: Update to 2.46.0.
      adds  9da8e27   gnu: r-gostats: Update to 2.46.0.
      adds  eabe78f   gnu: r-shortread: Update to 1.38.0.
      adds  712fe39   gnu: r-systempiper: Update to 1.14.0.
      adds  9370b8e   gnu: r-grohmm: Update to 1.14.0.
      adds  e5907a4   gnu: r-biocgenerics: Update to 0.26.0.
      adds  97af51e   gnu: r-biocinstaller: Update to 1.30.0.
      adds  e5f52b6   gnu: r-biocviews: Update to 1.48.0.
      adds  dc6c168   gnu: r-biocstyle: Update to 2.8.2.
      adds  3679a2f   gnu: r-bioccheck: Update to 1.16.0.
      adds  607acf3   gnu: r-dnacopy: Update to 1.54.0.
      adds  33cd15f   gnu: r-s4vectors: Update to 0.18.2.
      adds  8b44c28   gnu: r-iranges: Update to 2.14.10.
      adds  953c8b1   gnu: r-genomeinfodb: Update to 1.16.0.
      adds  4639025   gnu: r-edger: Update to 3.22.2.
      adds  d358a5a   gnu: r-variantannotation: Update to 1.26.0.
      adds  0a465e5   gnu: r-limma: Update to 3.36.1.
      adds  c2401d0   gnu: r-xvector: Update to 0.20.0.
      adds  e51afc6   gnu: r-genomicranges: Update to 1.32.3.
      adds  6fd71f1   gnu: r-biobase: Update to 2.40.0.
      adds  77f66fe   gnu: r-annotationdbi: Update to 1.42.1.
      adds  1763cba   gnu: r-biomart: Update to 2.36.1.
      adds  e6eac58   gnu: r-biocparallel: Update to 1.14.1.
      adds  942655a   gnu: r-biostrings: Update to 2.48.0.
      adds  d2367a8   gnu: r-rsamtools: Update to 1.32.0.
      adds  82f593f   gnu: r-delayedarray: Update to 0.6.0.
      adds  9bf4110   gnu: r-summarizedexperiment: Update to 1.10.1.
      adds  90102bd   gnu: r-genomicalignments: Update to 1.16.0.
      adds  a30df29   gnu: r-rtracklayer: Update to 1.40.2.
      adds  b4ad4ec   gnu: r-genomicfeatures: Update to 1.32.0.
      adds  2f66fec   gnu: r-graph: Update to 1.58.0.
      adds  f2eb2e4   gnu: r-topgo: Update to 2.32.0.
      adds  89ef133   gnu: r-bsgenome: Update to 1.48.0.
      adds  25d1df5   gnu: r-impute: Update to 1.54.0.
      adds  5229ced   gnu: r-seqpattern: Update to 1.12.0.
      adds  17d35de   gnu: r-genomation: Update to 1.12.0.
      adds  8217c2d   gnu: r-seqlogo: Update to 1.46.0.
      adds  7e6537e   gnu: r-motifrg: Update to 1.24.0.
      adds  2c480bb   gnu: r-zlibbioc: Update to 1.26.0.
      adds  1a08bb8   gnu: r-rhtslib: Update to 1.12.1.
      adds  72f11ff   gnu: r-bamsignals: Update to 1.12.0.
      adds  b6c2c8f   gnu: r-mutationalpatterns: Update to 1.6.1.
      adds  c76e8ba   gnu: r-tximport: Update to 1.8.0.
      adds  d73c572   gnu: r-rhdf5: Update to 2.24.0.
      adds  62509bb   gnu: r-annotationfilter: Update to 1.4.0.
      adds  8f94487   gnu: r-chipseq: Update to 1.30.0.
      adds  aae4f71   gnu: r-copywriter: Update to 2.12.0.
      adds  19ad568   gnu: r-methylkit: Update to 1.6.0.
      adds  9547dd8   gnu: r-sva: Update to 3.28.0.
      adds  a02b820   gnu: r-protgenerics: Update to 1.12.0.
      adds  39cc491   gnu: r-mzr: Update to 2.14.0.
      adds  82589f7   gnu: r-affyio: Update to 1.50.0.
      adds  5837f18   gnu: r-affy: Update to 1.58.0.
      adds  af87106   gnu: r-vsn: Update to 3.48.1.
      adds  7bd2582   gnu: r-mzid: Update to 1.18.0.
      adds  0f773b9   gnu: r-pcamethods: Update to 1.72.0.
      adds  250d78e   gnu: r-msnbase: Update to 2.6.1.
      adds  bdc8b40   gnu: r-msnid: Update to 1.14.0.
      adds  0ebd7a4   gnu: r-aroma-light: Update to 3.10.0.
      adds  749b712   gnu: r-deseq: Update to 1.32.0.
      adds  a67dd4c   gnu: r-edaseq: Update to 2.14.0.
      adds  420415b   gnu: r-interactivedisplaybase: Update to 1.18.0.
      adds  646439c   gnu: r-annotationhub: Update to 2.12.0.
      adds  15cc1a6   gnu: r-fastseg: Update to 1.26.0.
      adds  419e438   gnu: r-keggrest: Update to 1.20.0.
      adds  1ba126e   gnu: r-gage: Update to 2.30.0.
      adds  d1463f1   gnu: r-genomicfiles: Update to 1.16.0.
      adds  d3fb2ad   gnu: r-complexheatmap: Update to 1.18.0.
      adds  19adb89   gnu: r-dirichletmultinomial: Update to 1.22.0.
      adds  bbcd19f   gnu: r-ensembldb: Update to 2.4.1.
      adds  94ae875   gnu: r-organismdbi: Update to 1.22.0.
      adds  34cc18d   gnu: r-biovizbase: Update to 1.28.0.
      adds  e214a6e   gnu: r-ggbio: Update to 1.28.0.
      adds  dcd1f02   gnu: r-gqtlbase: Update to 1.12.0.
      adds  d26f95d   gnu: r-snpstats: Update to 1.30.0.
      adds  9b0b108   gnu: r-erma: Update to 0.12.0.
      adds  45c29a6   gnu: r-ldblock: Update to 1.10.0.
      adds  6929b97   gnu: r-gqtlstats: Update to 1.12.0.
      adds  fecbbac   gnu: r-gviz: Update to 1.24.0.
      adds  2d3c172   gnu: r-gwascat: Update to 2.12.0.
      adds  8db6256   gnu: r-sushi: Update to 1.18.0.
      adds  4dedecb   gnu: r-fithic: Update to 1.6.0.
      adds  c6c619c   gnu: r-hitc: Update to 1.24.0.
      adds  5cd725d   gnu: r-qvalue: Update to 2.12.0.
      adds  0840352   gnu: r-hdf5array: Update to 1.8.0.
      adds  e9c4173   gnu: r-rhdf5lib: Update to 1.2.1.
      adds  fd61323   gnu: r-beachmat: Update to 1.2.1.
      adds  d99e093   gnu: r-singlecellexperiment: Update to 1.2.0.
      adds  8ec56b2   gnu: r-delayedmatrixstats: Update to 1.2.0.
      adds  d7e3299   gnu: r-scran: Update to 1.8.2.
      adds  7799a01   gnu: r-rgraphviz: Update to 2.24.0.
      adds  8340224   gnu: r-mvtnorm: Update to 1.0-8.
      adds  41f1755   import: cran: Update to Bioconductor 3.7.
      adds  9296379   gnu: r-scater: Update to 1.8.0.
       new  e0f8970   Merge branch 'master' into core-updates

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 gnu/packages/bioconductor.scm   |  51 +++--
 gnu/packages/bioinformatics.scm | 473 ++++++++++++++++++++--------------------
 gnu/packages/emacs.scm          |   4 +-
 gnu/packages/graph.scm          |   4 +-
 gnu/packages/statistics.scm     |  33 ++-
 guix/import/cran.scm            |   4 +-
 guix/self.scm                   |  44 ++--
 7 files changed, 318 insertions(+), 295 deletions(-)