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01/01: gnu: java-picard: Fix manifest.
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From: |
Gábor Boskovits |
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Subject: |
01/01: gnu: java-picard: Fix manifest. |
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Date: |
Thu, 26 Jul 2018 06:47:19 -0400 (EDT) |
boskovits pushed a commit to branch master
in repository guix.
commit d60772dcdd55c0f8e236d40b76eb06eab790ab77
Author: Gábor Boskovits <address@hidden>
Date: Thu Jul 26 12:42:59 2018 +0200
gnu: java-picard: Fix manifest.
* gnu/packages/bioinformatics.scm (java-picard)[arguments]: Adjust phase
'edit-classpath-in-manifest for the new manifest generation code.
---
gnu/packages/bioinformatics.scm | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 245e7dd..73cca16 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10,6 +10,7 @@
;;; Copyright © 2017, 2018 Tobias Geerinckx-Rice <address@hidden>
;;; Copyright © 2017 Arun Isaac <address@hidden>
;;; Copyright © 2018 Joshua Sierles, Nextjournal <address@hidden>
+;;; Copyright © 2018 Gábor Boskovits <address@hidden>
;;;
;;; This file is part of GNU Guix.
;;;
@@ -3240,12 +3241,16 @@ VCF.")
(msg (format #f
"\
Class-Path: /~a \
- ~a/share/java/htsjdk.jar${line.separator}"
+ ~a/share/java/htsjdk.jar${line.separator}${line.separator}"
;; maximum line length
is 70
(string-tabulate
(const #\b) 57)
(assoc-ref inputs
"java-htsjdk"))))
(if (member "manifest" name)
`(,tag ,@kids
+ (replaceregexp
+ (@ (file "${manifest.file}")
+ (match "\\r\\n\\r\\n")
+ (replace
"${line.separator}")))
(echo
(@ (message ,msg)
(file "${manifest.file}")