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53/53: gnu: Add r-inspect.
From: |
Ricardo Wurmus |
Subject: |
53/53: gnu: Add r-inspect. |
Date: |
Thu, 16 Aug 2018 11:05:05 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit b64ce4b72564b45a422f4e7ffc30a5b95de91cff
Author: Ricardo Wurmus <address@hidden>
Date: Thu Aug 16 16:48:39 2018 +0200
gnu: Add r-inspect.
* gnu/packages/bioconductor.scm (r-inspect): New variable.
---
gnu/packages/bioconductor.scm | 37 +++++++++++++++++++++++++++++++++++++
1 file changed, 37 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index dfb0fe6..7e99318 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -28,6 +28,7 @@
#:use-module (gnu packages cran)
#:use-module (gnu packages compression)
#:use-module (gnu packages graph)
+ #:use-module (gnu packages maths)
#:use-module (gnu packages statistics)
#:use-module (gnu packages web))
@@ -802,3 +803,39 @@ information.")
@dfn{Reproducibility-Optimized Test Statistic} (ROTS) for differential testing
in omics data.")
(license license:gpl2+)))
+
+(define-public r-inspect
+ (package
+ (name "r-inspect")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "INSPEcT" version))
+ (sha256
+ (base32
+ "1gk0pwyimkswrvgb2xr3c2zy4myi448a2shr5ap65rq9pcpp0l8p"))))
+ (properties `((upstream-name . "INSPEcT")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-biocgenerics" ,r-biocgenerics)
+ ("r-biocparallel" ,r-biocparallel)
+ ("r-desolve" ,r-desolve)
+ ("r-genomicalignments" ,r-genomicalignments)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-genomicranges" ,r-genomicranges)
+ ("r-iranges" ,r-iranges)
+ ("r-preprocesscore" ,r-preprocesscore)
+ ("r-proc" ,r-proc)
+ ("r-rootsolve" ,r-rootsolve)
+ ("r-rsamtools" ,r-rsamtools)
+ ("r-s4vectors" ,r-s4vectors)))
+ (home-page "https://bioconductor.org/packages/INSPEcT")
+ (synopsis "Analysis of 4sU-seq and RNA-seq time-course data")
+ (description
+ "INSPEcT (INference of Synthesis, Processing and dEgradation rates in
+Time-Course experiments) analyses 4sU-seq and RNA-seq time-course data in
+order to evaluate synthesis, processing and degradation rates and assess via
+modeling the rates that determines changes in mature mRNA levels.")
+ (license license:gpl2)))
- 51/53: gnu: Add r-proc., (continued)
- 51/53: gnu: Add r-proc., Ricardo Wurmus, 2018/08/16
- 19/53: gnu: ghc-http-client: Update to 0.5.13.1., Ricardo Wurmus, 2018/08/16
- 27/53: gnu: ghc-conduit-combinators: Update to 1.3.0., Ricardo Wurmus, 2018/08/16
- 52/53: gnu: Add r-rootsolve., Ricardo Wurmus, 2018/08/16
- 46/53: gnu: Add ghc-intervalmap., Ricardo Wurmus, 2018/08/16
- 45/53: gnu: Add ghc-missingh., Ricardo Wurmus, 2018/08/16
- 28/53: gnu: ghc-mono-traversable: Update to 1.0.9.0., Ricardo Wurmus, 2018/08/16
- 50/53: gnu: Add ghc-chart., Ricardo Wurmus, 2018/08/16
- 24/53: gnu: ghc-ansi-wl-pprint: Update to 0.6.8.2., Ricardo Wurmus, 2018/08/16
- 37/53: gnu: ghc-http: Update to 4000.3.12., Ricardo Wurmus, 2018/08/16
- 53/53: gnu: Add r-inspect.,
Ricardo Wurmus <=
- 22/53: gnu: ghc-hunit: Update to 1.6.0.0., Ricardo Wurmus, 2018/08/16
- 47/53: gnu: Add ghc-operational., Ricardo Wurmus, 2018/08/16