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01/01: gnu: Add r-absfiltergsea.
From: |
Leo Famulari |
Subject: |
01/01: gnu: Add r-absfiltergsea. |
Date: |
Tue, 2 Oct 2018 16:23:56 -0400 (EDT) |
lfam pushed a commit to branch master
in repository guix.
commit 0f1622220a39a620854b0a268793e262746d460a
Author: pimi <address@hidden>
Date: Tue Oct 2 16:23:12 2018 -0400
gnu: Add r-absfiltergsea.
* gnu/packages/bioinformatics.scm (r-absfiltergsea): New variable.
---
gnu/packages/bioinformatics.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 172832d..b657bf6 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -13938,3 +13938,30 @@ generated by nanopore sequencing devices for the
purposes of quality control and
downstream analysis. Poretools operates directly on the native FAST5, a
variant
of the Hierarchical Data Format (HDF5) standard.")
(license license:expat))))
+
+(define-public r-absfiltergsea
+ (package
+ (name "r-absfiltergsea")
+ (version "1.5.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "AbsFilterGSEA" version))
+ (sha256
+ (base32 "15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"))))
+ (properties `((upstream-name . "AbsFilterGSEA")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-deseq" ,r-deseq)
+ ("r-limma" ,r-limma)
+ ("r-rcpp" ,r-rcpp)
+ ("r-rcpparmadillo" ,r-rcpparmadillo)))
+ (home-page "https://cran.r-project.org/web/packages/AbsFilterGSEA/")
+ (synopsis "Improved false positive control of gene-permuting with absolute
filtering")
+ (description
+ "This package provides a function that performs gene-permuting of a
gene-set
+enrichment analysis (GSEA) calculation with or without the absolute filtering.
+ Without filtering, users can perform (original) two-tailed or one-tailed
+absolute GSEA.")
+ (license license:gpl2)))