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01/01: gnu: Add r-dnabarcodes.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add r-dnabarcodes. |
Date: |
Mon, 8 Oct 2018 08:19:55 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f6e9976393c80d12b5f3235bf7fe593077cbc9d1
Author: Ricardo Wurmus <address@hidden>
Date: Mon Oct 8 14:18:48 2018 +0200
gnu: Add r-dnabarcodes.
* gnu/packages/bioconductor.scm (r-dnabarcodes): New variable.
---
gnu/packages/bioconductor.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 108f3c3..1b77985 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -886,3 +886,30 @@ Time-Course experiments) analyses 4sU-seq and RNA-seq
time-course data in
order to evaluate synthesis, processing and degradation rates and assess via
modeling the rates that determines changes in mature mRNA levels.")
(license license:gpl2)))
+
+(define-public r-dnabarcodes
+ (package
+ (name "r-dnabarcodes")
+ (version "1.10.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "DNABarcodes" version))
+ (sha256
+ (base32
+ "0xhna7f0kr7pp2hqwara5i57m9mdr65shflfxiyw6yy3g90pgb5x"))))
+ (properties `((upstream-name . "DNABarcodes")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-bh" ,r-bh)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://bioconductor.org/packages/DNABarcodes")
+ (synopsis "Create and analyze DNA barcodes")
+ (description
+ "This package offers tools to create DNA barcode sets capable of
+correcting insertion, deletion, and substitution errors. Existing barcodes
+can be analyzed regarding their minimal, maximal and average distances between
+barcodes. Finally, reads that start with a (possibly mutated) barcode can be
+demultiplexed, i.e. assigned to their original reference barcode.")
+ (license license:gpl2)))