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07/28: gnu: Add python-dnaio.
From: |
Ricardo Wurmus |
Subject: |
07/28: gnu: Add python-dnaio. |
Date: |
Sun, 21 Oct 2018 17:06:58 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit a5b0038cbdfd8ad81472279089aaebc4270c683a
Author: Ricardo Wurmus <address@hidden>
Date: Sun Oct 21 12:57:43 2018 +0200
gnu: Add python-dnaio.
* gnu/packages/bioinformatics.scm (python-dnaio): New variable.
---
gnu/packages/bioinformatics.scm | 23 +++++++++++++++++++++++
1 file changed, 23 insertions(+)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6469e9e..58b29e2 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1919,6 +1919,29 @@ files between different genome assemblies. It supports
most commonly used
file formats including SAM/BAM, Wiggle/BigWig, BED, GFF/GTF, VCF.")
(license license:gpl2+)))
+(define-public python-dnaio
+ (package
+ (name "python-dnaio")
+ (version "0.3")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (pypi-uri "dnaio" version))
+ (sha256
+ (base32
+ "0f16m7hdlm0fz1n7y5asy0v9ghyrq17ni1p9iybq22ddzyd49r27"))))
+ (build-system python-build-system)
+ (native-inputs
+ `(("python-cython" ,python-cython)
+ ("python-pytest" ,python-pytest)
+ ("python-xopen" ,python-xopen)))
+ (home-page "https://github.com/marcelm/dnaio/")
+ (synopsis "Read FASTA and FASTQ files efficiently")
+ (description
+ "dnaio is a Python library for fast parsing of FASTQ and also FASTA
+files. The code was previously part of the cutadapt tool.")
+ (license license:expat)))
+
(define-public cutadapt
(package
(name "cutadapt")
- 16/28: gnu: Add texlive-generic-listofitems., (continued)
- 16/28: gnu: Add texlive-generic-listofitems., Ricardo Wurmus, 2018/10/21
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- 12/28: gnu: deeptools: Update to 3.1.3., Ricardo Wurmus, 2018/10/21
- 08/28: gnu: cutadapt: Update to 1.18., Ricardo Wurmus, 2018/10/21
- 06/28: gnu: crossmap: Update to 0.2.9., Ricardo Wurmus, 2018/10/21
- 04/28: gnu: Add python-bx-python., Ricardo Wurmus, 2018/10/21
- 07/28: gnu: Add python-dnaio.,
Ricardo Wurmus <=
- 02/28: gnu: bwa-pssm: Fetch from git., Ricardo Wurmus, 2018/10/21
- 05/28: gnu: python-twobitreader: Update to 3.1.6., Ricardo Wurmus, 2018/10/21
- 03/28: gnu: python2-bx-python: Update to 0.8.2., Ricardo Wurmus, 2018/10/21
- 01/28: gnu: tophat: Update to 2.1.1., Ricardo Wurmus, 2018/10/21