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01/01: gnu: Add r-ruvseq.
From: |
Ricardo Wurmus |
Subject: |
01/01: gnu: Add r-ruvseq. |
Date: |
Mon, 22 Oct 2018 07:00:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 09aa3d063a0eacf3fca8d4803fbb62bd7b1ee663
Author: Ricardo Wurmus <address@hidden>
Date: Mon Oct 22 13:00:06 2018 +0200
gnu: Add r-ruvseq.
* gnu/packages/bioconductor.scm (r-ruvseq): New variable.
---
gnu/packages/bioconductor.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 1b77985..92b6745 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -913,3 +913,29 @@ can be analyzed regarding their minimal, maximal and
average distances between
barcodes. Finally, reads that start with a (possibly mutated) barcode can be
demultiplexed, i.e. assigned to their original reference barcode.")
(license license:gpl2)))
+
+(define-public r-ruvseq
+ (package
+ (name "r-ruvseq")
+ (version "1.14.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "RUVSeq" version))
+ (sha256
+ (base32
+ "16i5sm5af761k4zvspfi8jknsgln48bn538hxqqmlaq7wvlfxqxj"))))
+ (properties `((upstream-name . "RUVSeq")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biobase" ,r-biobase)
+ ("r-edaseq" ,r-edaseq)
+ ("r-edger" ,r-edger)
+ ("r-mass" ,r-mass)))
+ (home-page "https://github.com/drisso/RUVSeq")
+ (synopsis "Remove unwanted variation from RNA-Seq data")
+ (description
+ "This package implements methods to @dfn{remove unwanted variation} (RUV)
+of Risso et al. (2014) for the normalization of RNA-Seq read counts between
+samples.")
+ (license license:artistic2.0)))