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branch master updated (8243f4e -> 9255198)

From: Ricardo Wurmus
Subject: branch master updated (8243f4e -> 9255198)
Date: Wed, 7 Nov 2018 06:28:33 -0500 (EST)

rekado pushed a change to branch master
in repository guix.

      from  8243f4e   gnu: slang: Use a correct location for terminfo dirs.
       new  bfa5662   gnu: Add r-rcppannoy.
       new  b58940c   gnu: Add r-ncdf4.
       new  1e605c0   gnu: Add r-biocmanager.
       new  61686921  gnu: r-hpar: Update to 1.24.0.
       new  9865256   gnu: r-diffbind: Update to 2.10.0.
       new  f1c606c   gnu: r-marray: Update to 1.60.0.
       new  46cdcee   gnu: r-cghbase: Update to 1.42.0.
       new  9add093   gnu: r-cghcall: Update to 2.44.0.
       new  a92f523   gnu: r-qdnaseq: Update to 1.18.0.
       new  95ee4a4   gnu: r-multtest: Update to 2.38.0.
       new  14520b6   gnu: r-graph: Update to 1.60.0.
       new  57d2fcd   gnu: r-chippeakanno: Update to 3.16.0.
       new  4728e27   gnu: r-bayseq: Update to 2.16.0.
       new  aa802ea   gnu: r-chipcomp: Update to 1.12.0.
       new  e9427b2   gnu: r-ripseeker: Update to 1.22.0.
       new  e22e462   gnu: r-riboprofiling: Update to 1.12.0.
       new  c4fed65   gnu: r-riboseqr: Update to 1.16.0.
       new  bbc4787   gnu: r-interactionset: Update to 1.10.0.
       new  5f2d0e6   gnu: r-genomicinteractions: Update to 1.16.0.
       new  b858338   gnu: r-ctc: Update to 1.56.0.
       new  6ea9ae9   gnu: r-goseq: Update to 1.34.0.
       new  016afac   gnu: r-glimma: Update to 1.10.0.
       new  c348cfe   gnu: r-rots: Update to 1.10.0.
       new  6f1e1d0   gnu: r-inspect: Update to 1.12.0.
       new  318bcbc   gnu: r-dnabarcodes: Update to 1.12.0.
       new  286157d   gnu: Add r-biocneighbors.
       new  ed35d7c   gnu: r-ruvseq: Update to 1.16.0.
       new  d639d88   gnu: r-regioner: Update to 1.14.0.
       new  bb47aca   gnu: Add hdf5-1.10.
       new  269182b   gnu: r-rgraphviz: Update to 2.26.0.
       new  0dd84df   gnu: r-ps: Update to 1.2.1.
       new  65dd0e6   gnu: r-pkgload: Update to 1.0.2.
       new  ec0ee08   gnu: r-ffbase: Update to 0.12.7.
       new  56af171   gnu: r-ipred: Update to 0.9-8.
       new  5d986a3   gnu: r-psych: Update to 1.8.10.
       new  cea8a60   gnu: r-xts: Update to 0.11-2.
       new  84d0d86   gnu: r-sjmisc: Update to 2.7.6.
       new  244a5c4   gnu: r-flextable: Update to 0.4.6.
       new  3d6fa1a   gnu: r-sessioninfo: Update to 1.1.1.
       new  fc532b4   gnu: r-remotes: Update to 2.0.2.
       new  7466c3b   gnu: r-rcmdcheck: Update to 1.3.1.
       new  a44f8b0   gnu: r-pander: Update to 0.6.3.
       new  600a25e   gnu: r-mass: Update to 7.3-51.1.
       new  1966d8f   gnu: r-lattice: Update to 0.20-38.
       new  83ca17d   gnu: r-matrix: Update to 1.2-15.
       new  0de3ebb   gnu: r-survival: Update to 2.43-1.
       new  9094eb8   gnu: r-roxygen2: Update to 6.1.1.
       new  466397c   gnu: r-dt: Update to 0.5.
       new  1b35523   gnu: r-tidyr: Update to 0.8.2.
       new  9bd7848   gnu: r-preprocesscore: Update to 1.44.0.
       new  00281ea   gnu: r-modelmetrics: Update to 1.2.2.
       new  090d4c0   gnu: r-annotate: Update to 1.60.0.
       new  dadd682   gnu: r-copynumber: Update to 1.22.0.
       new  f4a95a0   gnu: r-geneplotter: Update to 1.60.0.
       new  85fb33a   gnu: r-genefilter: Update to 1.64.0.
       new  b5c552e   gnu: r-deseq2: Update to 1.22.1.
       new  856444a   gnu: r-dexseq: Update to 1.28.0.
       new  2ff6604   gnu: r-annotationforge: Update to 1.24.0.
       new  19a6149   gnu: r-rbgl: Update to 1.58.0.
       new  6dfb0b2   gnu: r-gseabase: Update to 1.44.0.
       new  95ae5ac   gnu: r-category: Update to 2.48.0.
       new  4a4b5b8   gnu: r-gostats: Update to 2.48.0.
       new  9adf78c   gnu: r-shortread: Update to 1.40.0.
       new  bf25930   gnu: r-systempiper: Update to 1.16.0.
       new  5c996ca   gnu: r-grohmm: Update to 1.16.0.
       new  2f28ffd   gnu: r-biocgenerics: Update to 0.28.0.
       new  36d7d82   gnu: r-biocinstaller: Update to 1.32.1.
       new  c8dbb5f   gnu: r-biocviews: Update to 1.50.1.
       new  6087f5c   gnu: r-biocstyle: Update to 2.10.0.
       new  a127d35   gnu: r-bioccheck: Update to 1.18.0.
       new  70f2758   gnu: r-dnacopy: Update to 1.56.0.
       new  a037453   gnu: r-s4vectors: Update to 0.20.0.
       new  9a8dd51   gnu: r-iranges: Update to 2.16.0.
       new  1287169   gnu: r-genomeinfodb: Update to 1.18.0.
       new  08cd2d5   gnu: r-edger: Update to 3.24.0.
       new  ca2945c   gnu: r-variantannotation: Update to 1.28.1.
       new  78d2ffd   gnu: r-limma: Update to 3.38.2.
       new  fb10fb7   gnu: r-xvector: Update to 0.22.0.
       new  8d3906a   gnu: r-genomicranges: Update to 1.34.0.
       new  5b82e12   gnu: r-biobase: Update to 2.42.0.
       new  3986e0d   gnu: r-annotationdbi: Update to 1.44.0.
       new  3359d44   gnu: r-biomart: Update to 2.38.0.
       new  cd88289   gnu: r-biocparallel: Update to 1.16.0.
       new  4804c59   gnu: r-biostrings: Update to 2.50.0.
       new  7f3778e   gnu: r-rsamtools: Update to 1.34.0.
       new  de4c38f   gnu: r-delayedarray: Update to 0.8.0.
       new  9fd4350   gnu: r-summarizedexperiment: Update to 1.12.0.
       new  52b9533   gnu: r-genomicalignments: Update to 1.18.0.
       new  c5f1d1c   gnu: r-rtracklayer: Update to 1.42.0.
       new  8a0d57d   gnu: r-genomicfeatures: Update to 1.34.1.
       new  44fa14d   gnu: r-topgo: Update to 2.34.0.
       new  78ecdbc   gnu: r-bsgenome: Update to 1.50.0.
       new  d11bc25   gnu: r-impute: Update to 1.56.0.
       new  45ba2ca   gnu: r-seqpattern: Update to 1.14.0.
       new  c5b0815   gnu: r-genomation: Update to 1.14.0.
       new  34f1c60   gnu: r-seqlogo: Update to 1.48.0.
       new  2919fef   gnu: r-motifrg: Update to 1.26.0.
       new  7d7c702   gnu: r-zlibbioc: Update to 1.28.0.
       new  4819689   gnu: r-rhtslib: Update to 1.14.0.
       new  338f860   gnu: r-bamsignals: Update to 1.14.0.
       new  ad90921   gnu: r-mutationalpatterns: Update to 1.8.0.
       new  d2b60be   gnu: r-tximport: Update to 1.10.0.
       new  cec8f09   gnu: r-annotationfilter: Update to 1.6.0.
       new  2e9d811   gnu: r-chipseq: Update to 1.32.0.
       new  739a856   gnu: r-copywriter: Update to 2.14.0.
       new  18604a7   gnu: r-methylkit: Update to 1.8.0.
       new  8af8688   gnu: r-sva: Update to 3.30.0.
       new  691ce09   gnu: r-protgenerics: Update to 1.14.0.
       new  511abd7   gnu: r-affyio: Update to 1.52.0.
       new  2b08548   gnu: r-affy: Update to 1.60.0.
       new  0e16fc4   gnu: r-vsn: Update to 3.50.0.
       new  2c4311d   gnu: r-mzid: Update to 1.20.0.
       new  73d7475   gnu: r-pcamethods: Update to 1.74.0.
       new  762aca7   gnu: r-msnbase: Update to 2.8.0.
       new  675d91a   gnu: r-msnid: Update to 1.16.0.
       new  800954e   gnu: r-aroma-light: Update to 3.12.0.
       new  7812e6b   gnu: r-deseq: Update to 1.34.0.
       new  b03951f   gnu: r-edaseq: Update to 2.16.0.
       new  d7ea34b   gnu: r-interactivedisplaybase: Update to 1.20.0.
       new  147633d   gnu: r-annotationhub: Update to 2.14.1.
       new  95df764   gnu: r-fastseg: Update to 1.28.0.
       new  4984212   gnu: r-keggrest: Update to 1.22.0.
       new  122e099   gnu: r-gage: Update to 2.32.0.
       new  d78c6ac   gnu: r-genomicfiles: Update to 1.18.0.
       new  5ae5a8e   gnu: r-complexheatmap: Update to 1.20.0.
       new  0c96e4b   gnu: r-dirichletmultinomial: Update to 1.24.0.
       new  e8e78c4   gnu: r-ensembldb: Update to 2.6.0.
       new  cdab2dc   gnu: r-organismdbi: Update to 1.24.0.
       new  e7a0bc1   gnu: r-biovizbase: Update to 1.30.0.
       new  f20c766   gnu: r-ggbio: Update to 1.30.0.
       new  181a843   gnu: r-gqtlbase: Update to 1.14.0.
       new  220ac15   gnu: r-snpstats: Update to 1.32.0.
       new  4b91335   gnu: r-erma: Update to 0.14.0.
       new  da679b5   gnu: r-ldblock: Update to 1.12.0.
       new  ea55326   gnu: r-gqtlstats: Update to 1.14.0.
       new  d57445c   gnu: r-gviz: Update to 1.26.0.
       new  85b16c0   gnu: r-gwascat: Update to 2.14.0.
       new  7468a76   gnu: r-sushi: Update to 1.20.0.
       new  8023912   gnu: r-fithic: Update to 1.8.0.
       new  d055f19   gnu: r-hitc: Update to 1.26.0.
       new  edb9124   gnu: r-qvalue: Update to 2.14.0.
       new  3c83360   gnu: r-beachmat: Update to 1.4.0.
       new  f93ec63   gnu: r-singlecellexperiment: Update to 1.4.0.
       new  48f2791   gnu: r-scater: Update to 1.10.0.
       new  70a3a76   gnu: r-scran: Update to 1.10.1.
       new  900ce2b   gnu: r-delayedmatrixstats: Update to 1.4.0.
       new  a1c2bf8   gnu: r-rcas: Update to 1.8.0.
       new  611a255   gnu: r-rhdf5: Update to 2.26.0.
       new  8e48d36   gnu: r-hdf5array: Update to 1.10.0.
       new  37200db   gnu: r-rhdf5lib: Update to 1.4.0.
       new  9255198   gnu: r-mzr: Update to 2.16.0.

The 151 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.

Summary of changes:
 gnu/packages/bioconductor.scm   | 134 +++++++-----
 gnu/packages/bioinformatics.scm | 469 ++++++++++++++++++++--------------------
 gnu/packages/cran.scm           | 128 ++++++++---
 gnu/packages/graph.scm          |   4 +-
 gnu/packages/maths.scm          |  19 ++
 gnu/packages/statistics.scm     |  39 ++--
 6 files changed, 453 insertions(+), 340 deletions(-)

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