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08/10: gnu: kentutils: Fetch sources from git.
From: |
Ricardo Wurmus |
Subject: |
08/10: gnu: kentutils: Fetch sources from git. |
Date: |
Wed, 7 Nov 2018 15:43:01 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 4257c10ad28bbac98a4ffe86d02c9ef83cfa1a8b
Author: Ricardo Wurmus <address@hidden>
Date: Wed Nov 7 21:29:40 2018 +0100
gnu: kentutils: Fetch sources from git.
* gnu/packages/bioinformatics.scm (kentutils)[source]: Fetch from git.
[arguments]: Add phase "fix-permissions".
---
gnu/packages/bioinformatics.scm | 13 ++++++++-----
1 file changed, 8 insertions(+), 5 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c65937a..b5523c3 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -11570,13 +11570,14 @@ models. TADbit is complemented by TADkit for
visualizing 3D models.")
(version "302.0.0")
(source
(origin
- (method url-fetch)
- (uri (string-append "https://github.com/ENCODE-DCC/kentUtils/"
- "archive/v" version ".tar.gz"))
- (file-name (string-append name "-" version ".tar.gz"))
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/ENCODE-DCC/kentUtils.git")
+ (commit (string-append "v" version))))
+ (file-name (git-file-name name version))
(sha256
(base32
- "134aja3k1cj32kbk1nnw0q9gxjb2krr15q6sga8qldzvc0585rmm"))
+ "0n1wbyjpzii2b9qhyp9r1q76j623cggpg3y8fmw78ld3z4y7ivha"))
(modules '((guix build utils)
(srfi srfi-26)
(ice-9 ftw)))
@@ -11627,6 +11628,8 @@ models. TADbit is complemented by TADkit for
visualizing 3D models.")
#:tests? #f
#:phases
(modify-phases %standard-phases
+ (add-after 'unpack 'fix-permissions
+ (lambda _ (make-file-writable "src/inc/localEnvironment.mk") #t))
(add-after 'unpack 'fix-paths
(lambda _
(substitute* "Makefile"
- branch master updated (b31e156 -> 2b773a9), Ricardo Wurmus, 2018/11/07
- 03/10: gnu: metabat: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 05/10: gnu: minced: Update to 0.3.2., Ricardo Wurmus, 2018/11/07
- 04/10: gnu: minced: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 06/10: gnu: pplacer: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 02/10: gnu: mash: Update to 2.1., Ricardo Wurmus, 2018/11/07
- 01/10: gnu: mash: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 09/10: gnu: libgff: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 07/10: gnu: r-seqgl: Fetch sources from git., Ricardo Wurmus, 2018/11/07
- 08/10: gnu: kentutils: Fetch sources from git.,
Ricardo Wurmus <=
- 10/10: gnu: sra-tools: Fetch sources from git., Ricardo Wurmus, 2018/11/07