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18/22: gnu: roary: Use INVOKE.
From: |
Ricardo Wurmus |
Subject: |
18/22: gnu: roary: Use INVOKE. |
Date: |
Thu, 8 Nov 2018 04:11:14 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit ce49fdcce91803c873b899b088f9ed2ce22f1cd3
Author: Ricardo Wurmus <address@hidden>
Date: Thu Nov 8 09:58:05 2018 +0100
gnu: roary: Use INVOKE.
* gnu/packages/bioinformatics.scm (roary)[arguments]: Use INVOKE and return
#T
unconditionally.
---
gnu/packages/bioinformatics.scm | 9 +++++----
1 file changed, 5 insertions(+), 4 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 1ceb40c..94b8266 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -4762,10 +4762,11 @@ partial genes, and identifies translation initiation
sites.")
(getenv "PATH")))
(setenv "PERL5LIB" (string-append (getcwd) "/lib" ":"
(getenv "PERL5LIB")))
- (zero? (length (filter (lambda (file)
- (display file)(display "\n")
- (not (zero? (system* "perl" file))))
- (find-files "t" ".*\\.t$"))))))
+ (for-each (lambda (file)
+ (display file)(display "\n")
+ (invoke "perl" file))
+ (find-files "t" ".*\\.t$"))
+ #t))
(replace 'install
;; There is no 'install' target in the Makefile.
(lambda* (#:key outputs #:allow-other-keys)
- 07/22: gnu: sra-tools: Use INVOKE., (continued)
- 07/22: gnu: sra-tools: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 14/22: gnu: sra-tools: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 11/22: gnu: ngs-sdk: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 12/22: gnu: ncbi-vdb: Update to 2.9.3., Ricardo Wurmus, 2018/11/08
- 08/22: gnu: taxtastic: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 09/22: gnu: emboss: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 01/22: gnu: fraggenescan: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 19/22: gnu: pplacer-scripts: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 03/22: gnu: vsearch: Remove custom autogen phase., Ricardo Wurmus, 2018/11/08
- 15/22: gnu: vsearch: Update to 2.9.1., Ricardo Wurmus, 2018/11/08
- 18/22: gnu: roary: Use INVOKE.,
Ricardo Wurmus <=
- 21/22: gnu: cmus: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 06/22: gnu: muscle: Use INVOKE., Ricardo Wurmus, 2018/11/08
- 13/22: gnu: plink-ng: Fetch sources from git., Ricardo Wurmus, 2018/11/08
- 22/22: gnu: cmus: Fetch sources from git., Ricardo Wurmus, 2018/11/08