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02/02: gnu: Add mantis.
From: |
guix-commits |
Subject: |
02/02: gnu: Add mantis. |
Date: |
Mon, 7 Jan 2019 05:56:28 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit e942813aac7651986b556407956f61943578eb4d
Author: Ricardo Wurmus <address@hidden>
Date: Mon Jan 7 11:55:19 2019 +0100
gnu: Add mantis.
* gnu/packages/bioinformatics.scm (mantis): New variable.
---
gnu/packages/bioinformatics.scm | 35 ++++++++++++++++++++++++++++++++++-
1 file changed, 34 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index d4661cf..2a06a6e 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1,5 +1,5 @@
;;; GNU Guix --- Functional package management for GNU
-;;; Copyright © 2014, 2015, 2016, 2017, 2018 Ricardo Wurmus <address@hidden>
+;;; Copyright © 2014, 2015, 2016, 2017, 2018, 2019 Ricardo Wurmus
<address@hidden>
;;; Copyright © 2015, 2016, 2017, 2018 Ben Woodcroft <address@hidden>
;;; Copyright © 2015, 2016 Pjotr Prins <address@hidden>
;;; Copyright © 2015 Andreas Enge <address@hidden>
@@ -13285,6 +13285,39 @@ descriptive settings file. The result is a set of
comprehensive, interactive
HTML reports with interesting findings about your samples.")
(license license:gpl3+)))
+(define-public mantis
+ (let ((commit "4ffd171632c2cb0056a86d709dfd2bf21bc69b84")
+ (revision "1"))
+ (package
+ (name "mantis")
+ (version (git-version "0" revision commit))
+ (source (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/splatlab/mantis.git")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32
+ "0iqbr0dhmlc8mzpirmm2s4pkzkwdgrcx50yx6cv3wlr2qi064p55"))))
+ (build-system cmake-build-system)
+ (arguments '(#:tests? #f)) ; there are none
+ (inputs
+ `(("sdsl-lite" ,sdsl-lite)
+ ("openssl" ,openssl)
+ ("zlib" ,zlib)))
+ (home-page "https://github.com/splatlab/mantis")
+ (synopsis "Large-scale sequence-search index data structure")
+ (description "Mantis is a space-efficient data structure that can be
+used to index thousands of raw-read genomics experiments and facilitate
+large-scale sequence searches on those experiments. Mantis uses counting
+quotient filters instead of Bloom filters, enabling rapid index builds and
+queries, small indexes, and exact results, i.e., no false positives or
+negatives. Furthermore, Mantis is also a colored de Bruijn graph
+representation, so it supports fast graph traversal and other topological
+analyses in addition to large-scale sequence-level searches.")
+ (license license:bsd-3))))
+
(define-public r-diversitree
(package
(name "r-diversitree")