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07/41: gnu: Add r-tfmpvalue.
From: |
guix-commits |
Subject: |
07/41: gnu: Add r-tfmpvalue. |
Date: |
Wed, 9 Jan 2019 09:44:53 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit b2e777b27cb677592f7a72fef491ec476d7ae65a
Author: Ricardo Wurmus <address@hidden>
Date: Wed Jan 9 14:37:36 2019 +0100
gnu: Add r-tfmpvalue.
* gnu/packages/cran.scm (r-tfmpvalue): New variable.
---
gnu/packages/cran.scm | 26 ++++++++++++++++++++++++++
1 file changed, 26 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index aa9a063..16d576e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -9024,3 +9024,29 @@ stack groups of columns and to reshape wide data, even
when the data are
and which @code{melt} and @code{dcast} from @code{reshape2} do not easily
handle.")
(license license:gpl3)))
+
+(define-public r-tfmpvalue
+ (package
+ (name "r-tfmpvalue")
+ (version "0.0.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "TFMPvalue" version))
+ (sha256
+ (base32
+ "0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"))))
+ (properties `((upstream-name . "TFMPvalue")))
+ (build-system r-build-system)
+ (propagated-inputs `(("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/ge11232002/TFMPvalue")
+ (synopsis "P-value computation for position weight matrices")
+ (description
+ "In putative @dfn{Transcription Factor Binding Sites} (TFBSs)
+identification from sequence/alignments, we are interested in the significance
+of certain match scores. TFMPvalue provides the accurate calculation of a
+p-value with a score threshold for position weight matrices, or the score with
+a given p-value. It is an interface to code originally made available by
+Helene Touzet and Jean-Stephane Varre, 2007, Algorithms Mol Biol:2, 15.
+Touzet and Varre (2007).")
+ (license license:gpl2)))
- branch master updated (804b9b1 -> 658b2b6), guix-commits, 2019/01/09
- 05/41: gnu: Add r-lassopv., guix-commits, 2019/01/09
- 03/41: gnu: Add r-vbsr., guix-commits, 2019/01/09
- 08/41: gnu: Add r-rnifti., guix-commits, 2019/01/09
- 07/41: gnu: Add r-tfmpvalue.,
guix-commits <=
- 04/41: gnu: Add r-flare., guix-commits, 2019/01/09
- 11/41: gnu: Add r-reportr., guix-commits, 2019/01/09
- 09/41: gnu: Add r-shades., guix-commits, 2019/01/09
- 14/41: gnu: Add r-kohonen., guix-commits, 2019/01/09
- 15/41: gnu: Add r-nnls., guix-commits, 2019/01/09
- 06/41: gnu: Add r-splitstackshape., guix-commits, 2019/01/09
- 02/41: gnu: Add r-rpostgresql., guix-commits, 2019/01/09
- 12/41: gnu: Add r-tractor-base., guix-commits, 2019/01/09
- 01/41: gnu: Add r-rspectra., guix-commits, 2019/01/09
- 18/41: gnu: Add r-als., guix-commits, 2019/01/09