06/14: gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit c3adc8305465318e3d83f2a881ab54076e288a0a
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Mar 6 21:26:54 2019 +0100

    gnu: r-bsgenome-mmusculus-ucsc-mm10: Move to (gnu packages bioconductor).
    
    * gnu/packages/bioinformatics.scm (r-bsgenome-mmusculus-ucsc-mm10):
    Move from here...
    * gnu/packages/bioconductor.scm (r-bsgenome-mmusculus-ucsc-mm10): ...to 
here.
---
 gnu/packages/bioconductor.scm   | 32 ++++++++++++++++++++++++++++++++
 gnu/packages/bioinformatics.scm | 32 --------------------------------
 2 files changed, 32 insertions(+), 32 deletions(-)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 6a58391..936f521 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -232,6 +232,38 @@ Repeats Finder (TRF mask).  Only the AGAPS and AMB masks 
are \"active\" by
 default."  )
     (license license:artistic2.0)))
 
+(define-public r-bsgenome-mmusculus-ucsc-mm10
+  (package
+    (name "r-bsgenome-mmusculus-ucsc-mm10")
+    (version "1.4.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/annotation/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/annotation/src/contrib/"
+                                  "BSgenome.Mmusculus.UCSC.mm10_"
+                                  version ".tar.gz"))
+              (sha256
+               (base32
+                "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
+    (properties
+     `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
+    (build-system r-build-system)
+    ;; As this package provides little more than a very large data file it
+    ;; doesn't make sense to build substitutes.
+    (arguments `(#:substitutable? #f))
+    (propagated-inputs
+     `(("r-bsgenome" ,r-bsgenome)))
+    (home-page
+     "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/";)
+    (synopsis "Full genome sequences for Mouse")
+    (description
+     "This package provides full genome sequences for Mus
+musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
+in Biostrings objects.")
+    (license license:artistic2.0)))
+
 (define-public r-org-dr-eg-db
   (package
     (name "r-org-dr-eg-db")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 51bb3bb..ef65dd9 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8105,38 +8105,6 @@ plots the corresponding sequence logo as introduced by 
Schneider and
 Stephens (1990).")
     (license license:lgpl2.0+)))
 
-(define-public r-bsgenome-mmusculus-ucsc-mm10
-  (package
-    (name "r-bsgenome-mmusculus-ucsc-mm10")
-    (version "1.4.0")
-    (source (origin
-              (method url-fetch)
-              ;; We cannot use bioconductor-uri here because this tarball is
-              ;; located under "data/annotation/" instead of "bioc/".
-              (uri (string-append "https://www.bioconductor.org/packages/";
-                                  "release/data/annotation/src/contrib/"
-                                  "BSgenome.Mmusculus.UCSC.mm10_"
-                                  version ".tar.gz"))
-              (sha256
-               (base32
-                "12s0nm2na9brjad4rn9l7d3db2aj8qa1xvz0y1k7gk08wayb6bkf"))))
-    (properties
-     `((upstream-name . "BSgenome.Mmusculus.UCSC.mm10")))
-    (build-system r-build-system)
-    ;; As this package provides little more than a very large data file it
-    ;; doesn't make sense to build substitutes.
-    (arguments `(#:substitutable? #f))
-    (propagated-inputs
-     `(("r-bsgenome" ,r-bsgenome)))
-    (home-page
-     "https://www.bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/";)
-    (synopsis "Full genome sequences for Mouse")
-    (description
-     "This package provides full genome sequences for Mus
-musculus (Mouse) as provided by UCSC (mm10, December 2011) and stored
-in Biostrings objects.")
-    (license license:artistic2.0)))
-
 (define-public r-txdb-mmusculus-ucsc-mm10-knowngene
   (package
     (name "r-txdb-mmusculus-ucsc-mm10-knowngene")