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02/02: gnu: cd-hit: Support longer sequences.
From: |
guix-commits |
Subject: |
02/02: gnu: cd-hit: Support longer sequences. |
Date: |
Thu, 7 Mar 2019 07:38:20 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 3b296475bf6a54fc973cb11695427fee9ec3dcab
Author: Ricardo Wurmus <address@hidden>
Date: Thu Mar 7 13:24:23 2019 +0100
gnu: cd-hit: Support longer sequences.
* gnu/packages/bioinformatics.scm (cd-hit)[arguments]: Pass MAX_SEQ to make
flags.
---
gnu/packages/bioinformatics.scm | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index c0e4628..2a7d334 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -1770,7 +1770,9 @@ high-throughput sequencing data – with an emphasis on
simplicity.")
`(#:tests? #f ; there are no tests
#:make-flags
;; Executables are copied directly to the PREFIX.
- (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin"))
+ (list (string-append "PREFIX=" (assoc-ref %outputs "out") "/bin")
+ ;; Support longer sequences (e.g. Pacbio sequences)
+ "MAX_SEQ=60000000")
#:phases
(modify-phases %standard-phases
;; No "configure" script