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03/23: gnu: r-qvalue: Move to (gnu packages bioconductor).
From: |
guix-commits |
Subject: |
03/23: gnu: r-qvalue: Move to (gnu packages bioconductor). |
Date: |
Tue, 12 Mar 2019 17:48:04 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 4dc2ecc27933a1c1f41f04ca9f3b6940f592f49b
Author: Ricardo Wurmus <address@hidden>
Date: Tue Mar 12 22:06:05 2019 +0100
gnu: r-qvalue: Move to (gnu packages bioconductor).
* gnu/packages/bioinformatics.scm (r-qvalue): Move from here...
* gnu/packages/bioconductor.scm (r-qvalue): ...to here.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
gnu/packages/bioinformatics.scm | 29 -----------------------------
2 files changed, 29 insertions(+), 29 deletions(-)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 329bacb..44b81b0 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -807,6 +807,35 @@ region sets and other genomic features.")
"This package provides functions for plotting genomic data.")
(license license:artistic2.0)))
+(define-public r-qvalue
+ (package
+ (name "r-qvalue")
+ (version "2.14.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "qvalue" version))
+ (sha256
+ (base32
+ "0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ggplot2" ,r-ggplot2)
+ ("r-reshape2" ,r-reshape2)))
+ (home-page "http://github.com/jdstorey/qvalue")
+ (synopsis "Q-value estimation for false discovery rate control")
+ (description
+ "This package takes a list of p-values resulting from the simultaneous
+testing of many hypotheses and estimates their q-values and local @dfn{false
+discovery rate} (FDR) values. The q-value of a test measures the proportion
+of false positives incurred when that particular test is called significant.
+The local FDR measures the posterior probability the null hypothesis is true
+given the test's p-value. Various plots are automatically generated, allowing
+one to make sensible significance cut-offs. The software can be applied to
+problems in genomics, brain imaging, astrophysics, and data mining.")
+ ;; Any version of the LGPL.
+ (license license:lgpl3+)))
+
(define-public r-diffbind
(package
(name "r-diffbind")
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 26fcc3a..e29f2a7 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -10293,35 +10293,6 @@ quality controls, normalization, visualization, and
further analysis are also
provided.")
(license license:artistic2.0)))
-(define-public r-qvalue
- (package
- (name "r-qvalue")
- (version "2.14.1")
- (source
- (origin
- (method url-fetch)
- (uri (bioconductor-uri "qvalue" version))
- (sha256
- (base32
- "0kxavzm1j2mk26qicmjm90nxx4w5h3dxighzks7wzihay3k8cysc"))))
- (build-system r-build-system)
- (propagated-inputs
- `(("r-ggplot2" ,r-ggplot2)
- ("r-reshape2" ,r-reshape2)))
- (home-page "http://github.com/jdstorey/qvalue")
- (synopsis "Q-value estimation for false discovery rate control")
- (description
- "This package takes a list of p-values resulting from the simultaneous
-testing of many hypotheses and estimates their q-values and local @dfn{false
-discovery rate} (FDR) values. The q-value of a test measures the proportion
-of false positives incurred when that particular test is called significant.
-The local FDR measures the posterior probability the null hypothesis is true
-given the test's p-value. Various plots are automatically generated, allowing
-one to make sensible significance cut-offs. The software can be applied to
-problems in genomics, brain imaging, astrophysics, and data mining.")
- ;; Any version of the LGPL.
- (license license:lgpl3+)))
-
(define-public r-hdf5array
(package
(name "r-hdf5array")
- 09/23: gnu: Add r-tensora., (continued)
- 09/23: gnu: Add r-tensora., guix-commits, 2019/03/12
- 06/23: gnu: Add r-upsetr., guix-commits, 2019/03/12
- 10/23: gnu: Add r-rarpack., guix-commits, 2019/03/12
- 05/23: gnu: Add r-blockmodeling., guix-commits, 2019/03/12
- 14/23: gnu: Add r-gamlss-dist., guix-commits, 2019/03/12
- 12/23: gnu: Add r-cobs., guix-commits, 2019/03/12
- 08/23: gnu: Add r-bayesm., guix-commits, 2019/03/12
- 07/23: gnu: Add r-outliers., guix-commits, 2019/03/12
- 04/23: gnu: Add r-dorng., guix-commits, 2019/03/12
- 02/23: gnu: Add r-hsmmsinglecell., guix-commits, 2019/03/12
- 03/23: gnu: r-qvalue: Move to (gnu packages bioconductor).,
guix-commits <=
- 01/23: gnu: Add guile-persist., guix-commits, 2019/03/12