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02/04: gnu: Add r-fdb-infiniummethylation-hg19.
From: |
guix-commits |
Subject: |
02/04: gnu: Add r-fdb-infiniummethylation-hg19. |
Date: |
Wed, 13 Mar 2019 08:36:15 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 0f5c9cec502e0b4c8b4a8aa5b9c42474920c3e03
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 13 13:35:18 2019 +0100
gnu: Add r-fdb-infiniummethylation-hg19.
* gnu/packages/bioconductor.scm (r-fdb-infiniummethylation-hg19): New
variable.
---
gnu/packages/bioconductor.scm | 32 ++++++++++++++++++++++++++++++++
1 file changed, 32 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 79eab6b..39eb705 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -650,6 +650,38 @@ the TxDb object of Mouse data as provided by UCSC (mm10,
December 2011)
based on the knownGene track.")
(license license:artistic2.0)))
+(define-public r-fdb-infiniummethylation-hg19
+ (package
+ (name "r-fdb-infiniummethylation-hg19")
+ (version "2.2.0")
+ (source (origin
+ (method url-fetch)
+ ;; We cannot use bioconductor-uri here because this tarball is
+ ;; located under "data/annotation/" instead of "bioc/".
+ (uri (string-append "https://www.bioconductor.org/packages/"
+ "release/data/annotation/src/contrib/"
+ "FDb.InfiniumMethylation.hg19_"
+ version ".tar.gz"))
+ (sha256
+ (base32
+ "0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"))))
+ (properties
+ `((upstream-name . "FDb.InfiniumMethylation.hg19")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-genomicfeatures" ,r-genomicfeatures)
+ ("r-annotationdbi" ,r-annotationdbi)
+ ("r-org-hs-eg-db" ,r-org-hs-eg-db)
+ ("r-txdb-hsapiens-ucsc-hg19-knowngene"
,r-txdb-hsapiens-ucsc-hg19-knowngene)))
+ (home-page
"https://bioconductor.org/packages/FDb.InfiniumMethylation.hg19/")
+ (synopsis "Compiled HumanMethylation27 and HumanMethylation450
annotations")
+ (description
+ "This is an annotation package for Illumina Infinium DNA methylation
+probes. It contains the compiled HumanMethylation27 and HumanMethylation450
+annotations.")
+ (license license:artistic2.0)))
+
;;; Experiment data