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13/15: gnu: Add r-adegenet.
From: |
guix-commits |
Subject: |
13/15: gnu: Add r-adegenet. |
Date: |
Sun, 24 Mar 2019 18:44:25 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 91c1fbdfdd2b18ae3c77c150d558c7947276d59e
Author: Ricardo Wurmus <address@hidden>
Date: Sun Mar 24 23:34:18 2019 +0100
gnu: Add r-adegenet.
* gnu/packages/cran.scm (r-adegenet): New variable.
---
gnu/packages/cran.scm | 39 +++++++++++++++++++++++++++++++++++++++
1 file changed, 39 insertions(+)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6079ed9..b1466dc 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -12266,3 +12266,42 @@ distance and tessellations, for summarizing these
objects, and for permitting
their use in spatial data analysis, including regional aggregation by minimum
spanning tree.")
(license license:gpl2+)))
+
+(define-public r-adegenet
+ (package
+ (name "r-adegenet")
+ (version "2.1.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "adegenet" version))
+ (sha256
+ (base32
+ "0ynfblp0hbd3dp3k86fn1wyhqr28lk6hs2bg4q7gyf0sfdfzwhrh"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-ade4" ,r-ade4)
+ ("r-ape" ,r-ape)
+ ("r-boot" ,r-boot)
+ ("r-dplyr" ,r-dplyr)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-igraph" ,r-igraph)
+ ("r-mass" ,r-mass)
+ ("r-reshape2" ,r-reshape2)
+ ("r-seqinr" ,r-seqinr)
+ ("r-shiny" ,r-shiny)
+ ("r-spdep" ,r-spdep)
+ ("r-vegan" ,r-vegan)))
+ (home-page "https://github.com/thibautjombart/adegenet")
+ (synopsis "Exploratory analysis of genetic and genomic data")
+ (description
+ "This package provides a toolset for the exploration of genetic and
+genomic data. Adegenet provides formal (S4) classes for storing and handling
+various genetic data, including genetic markers with varying ploidy and
+hierarchical population structure (@code{genind} class), alleles counts by
+populations (@code{genpop}), and genome-wide SNP data (@code{genlight}). It
+also implements original multivariate methods (DAPC, sPCA), graphics,
+statistical tests, simulation tools, distance and similarity measures, and
+several spatial methods. A range of both empirical and simulated datasets is
+also provided to illustrate various methods.")
+ (license license:gpl2+)))
- branch master updated (64843c6 -> cd977b3), guix-commits, 2019/03/24
- 02/15: gnu: Add r-snpmaxsel., guix-commits, 2019/03/24
- 01/15: gnu: Add r-stepwise., guix-commits, 2019/03/24
- 04/15: gnu: Add r-units., guix-commits, 2019/03/24
- 10/15: gnu: Add r-spdep., guix-commits, 2019/03/24
- 07/15: gnu: Add r-learnbayes., guix-commits, 2019/03/24
- 13/15: gnu: Add r-adegenet.,
guix-commits <=
- 03/15: gnu: Add udunits., guix-commits, 2019/03/24
- 08/15: gnu: Add r-deldir., guix-commits, 2019/03/24
- 05/15: gnu: Add r-classint., guix-commits, 2019/03/24
- 06/15: gnu: Add r-spdata., guix-commits, 2019/03/24
- 15/15: gnu: Add r-rmetasim., guix-commits, 2019/03/24
- 12/15: gnu: r-seqinr: Move to (gnu packages cran)., guix-commits, 2019/03/24
- 11/15: gnu: r-acsnminer: Move to (gnu packages cran)., guix-commits, 2019/03/24
- 09/15: gnu: Add r-sf., guix-commits, 2019/03/24
- 14/15: gnu: Add r-pegas., guix-commits, 2019/03/24