[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
06/20: gnu: Add r-fgsea.
From: |
guix-commits |
Subject: |
06/20: gnu: Add r-fgsea. |
Date: |
Wed, 27 Mar 2019 11:17:30 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit af26c7ae7010d72c8f4759f3f4e2421cd9a2183b
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 27 15:24:14 2019 +0100
gnu: Add r-fgsea.
* gnu/packages/bioconductor.scm (r-fgsea): New variable.
---
gnu/packages/bioconductor.scm | 29 +++++++++++++++++++++++++++++
1 file changed, 29 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 59ca93d..3f5e61f 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2724,3 +2724,32 @@ and NE_k statistics in a statistical framework for
determining whether a
specified group of genes for a pathway has a coordinated association with a
phenotype of interest.")
(license license:gpl2)))
+
+(define-public r-fgsea
+ (package
+ (name "r-fgsea")
+ (version "1.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "fgsea" version))
+ (sha256
+ (base32
+ "0cxxvlmg340l5l5fz4abbwppiri0ibg4navvq5k3wg511mz8ma2q"))))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biocparallel" ,r-biocparallel)
+ ("r-data-table" ,r-data-table)
+ ("r-fastmatch" ,r-fastmatch)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-gridextra" ,r-gridextra)
+ ("r-matrix" ,r-matrix)
+ ("r-rcpp" ,r-rcpp)))
+ (home-page "https://github.com/ctlab/fgsea/")
+ (synopsis "Fast gene set enrichment analysis")
+ (description
+ "The package implements an algorithm for fast gene set enrichment
+analysis. Using the fast algorithm allows to make more permutations and get
+more fine grained p-values, which allows to use accurate stantard approaches
+to multiple hypothesis correction.")
+ (license license:expat)))
- branch master updated (06013a4 -> f8295ee), guix-commits, 2019/03/27
- 01/20: gnu: Add r-rttf2pt1., guix-commits, 2019/03/27
- 03/20: gnu: Add r-extrafont., guix-commits, 2019/03/27
- 06/20: gnu: Add r-fgsea.,
guix-commits <=
- 02/20: gnu: Add r-extrafontdb., guix-commits, 2019/03/27
- 05/20: gnu: Add r-msigdbr., guix-commits, 2019/03/27
- 08/20: gnu: Add r-gridgraphics., guix-commits, 2019/03/27
- 04/20: gnu: Add r-xkcd., guix-commits, 2019/03/27
- 11/20: gnu: Add r-triebeard., guix-commits, 2019/03/27
- 10/20: gnu: Add r-ggplotify., guix-commits, 2019/03/27
- 07/20: gnu: Add r-do-db., guix-commits, 2019/03/27
- 09/20: gnu: Add r-farver., guix-commits, 2019/03/27
- 12/20: gnu: Add r-tweenr., guix-commits, 2019/03/27
- 19/20: gnu: Add r-enrichplot., guix-commits, 2019/03/27