[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
20/20: gnu: Add r-clusterprofiler.
From: |
guix-commits |
Subject: |
20/20: gnu: Add r-clusterprofiler. |
Date: |
Wed, 27 Mar 2019 11:17:33 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit f8295ee6dea95eec54196c967f034a1597e45e70
Author: Ricardo Wurmus <address@hidden>
Date: Wed Mar 27 15:45:35 2019 +0100
gnu: Add r-clusterprofiler.
* gnu/packages/bioconductor.scm (r-clusterprofiler): New variable.
---
gnu/packages/bioconductor.scm | 33 +++++++++++++++++++++++++++++++++
1 file changed, 33 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 098cee8..46d1880 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -2849,3 +2849,36 @@ data.")
interpreting functional enrichment results obtained from ORA or GSEA analyses.
All the visualization methods are developed based on ggplot2 graphics.")
(license license:artistic2.0)))
+
+(define-public r-clusterprofiler
+ (package
+ (name "r-clusterprofiler")
+ (version "3.10.1")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "clusterProfiler" version))
+ (sha256
+ (base32
+ "1v4fh8ll7zk8yhbaa0nq9xvqrb05kyvbpwkqpnjf07s873805rxm"))))
+ (properties
+ `((upstream-name . "clusterProfiler")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-annotationdbi" ,r-annotationdbi)
+ ("r-dose" ,r-dose)
+ ("r-enrichplot" ,r-enrichplot)
+ ("r-ggplot2" ,r-ggplot2)
+ ("r-go-db" ,r-go-db)
+ ("r-gosemsim" ,r-gosemsim)
+ ("r-magrittr" ,r-magrittr)
+ ("r-plyr" ,r-plyr)
+ ("r-qvalue" ,r-qvalue)
+ ("r-rvcheck" ,r-rvcheck)
+ ("r-tidyr" ,r-tidyr)))
+ (home-page "https://guangchuangyu.github.io/software/clusterProfiler/")
+ (synopsis "Analysis and visualization of functional profiles for gene
clusters")
+ (description
+ "This package implements methods to analyze and visualize functional
+profiles (GO and KEGG) of gene and gene clusters.")
+ (license license:artistic2.0)))
- 10/20: gnu: Add r-ggplotify., (continued)
- 10/20: gnu: Add r-ggplotify., guix-commits, 2019/03/27
- 07/20: gnu: Add r-do-db., guix-commits, 2019/03/27
- 09/20: gnu: Add r-farver., guix-commits, 2019/03/27
- 12/20: gnu: Add r-tweenr., guix-commits, 2019/03/27
- 19/20: gnu: Add r-enrichplot., guix-commits, 2019/03/27
- 18/20: gnu: Add r-dose., guix-commits, 2019/03/27
- 17/20: gnu: Add r-ggraph., guix-commits, 2019/03/27
- 16/20: gnu: Add r-europepmc., guix-commits, 2019/03/27
- 13/20: gnu: Add r-polyclip., guix-commits, 2019/03/27
- 14/20: gnu: Add r-urltools., guix-commits, 2019/03/27
- 20/20: gnu: Add r-clusterprofiler.,
guix-commits <=
- 15/20: gnu: Add r-ggforce., guix-commits, 2019/03/27