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03/07: gnu: Add r-rgadem.
From: |
guix-commits |
Subject: |
03/07: gnu: Add r-rgadem. |
Date: |
Fri, 29 Mar 2019 12:13:54 -0400 (EDT) |
rekado pushed a commit to branch master
in repository guix.
commit 051e8e1a5bec01952012cf7f1903cd72add0e25c
Author: Ricardo Wurmus <address@hidden>
Date: Fri Mar 29 14:59:12 2019 +0100
gnu: Add r-rgadem.
* gnu/packages/bioconductor.scm (r-rgadem): New variable.
---
gnu/packages/bioconductor.scm | 25 +++++++++++++++++++++++++
1 file changed, 25 insertions(+)
diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index 48c6009..6df46ef 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -3184,3 +3184,28 @@ epigenome- and transcriptome-wide association studies.
To this end bacon
constructs an empirical null distribution using a Gibbs Sampling algorithm by
fitting a three-component normal mixture on z-scores.")
(license license:gpl2+)))
+
+(define-public r-rgadem
+ (package
+ (name "r-rgadem")
+ (version "2.30.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (bioconductor-uri "rGADEM" version))
+ (sha256
+ (base32
+ "1a3mvxabp7yb275cv1wr0rzyvjhnsaysk2hnmll4z4cci171z2j2"))))
+ (properties `((upstream-name . "rGADEM")))
+ (build-system r-build-system)
+ (propagated-inputs
+ `(("r-biostrings" ,r-biostrings)
+ ("r-bsgenome" ,r-bsgenome)
+ ("r-iranges" ,r-iranges)
+ ("r-seqlogo" ,r-seqlogo)))
+ (home-page "https://bioconductor.org/packages/rGADEM/")
+ (synopsis "De novo sequence motif discovery")
+ (description
+ "rGADEM is an efficient de novo motif discovery tool for large-scale
+genomic sequence data.")
+ (license license:artistic2.0)))
- branch master updated (9398152 -> 32e0f90), guix-commits, 2019/03/29
- 03/07: gnu: Add r-rgadem.,
guix-commits <=
- 04/07: gnu: Add r-motiv., guix-commits, 2019/03/29
- 07/07: gnu: Add r-atacseqqc., guix-commits, 2019/03/29
- 05/07: gnu: Add r-motifstack., guix-commits, 2019/03/29
- 06/07: gnu: Add r-genomicscores., guix-commits, 2019/03/29
- 01/07: gnu: Add r-bacon., guix-commits, 2019/03/29
- 02/07: gnu: Add r-preseqr., guix-commits, 2019/03/29