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09/10: gnu: Add r-arrmdata.


From: guix-commits
Subject: 09/10: gnu: Add r-arrmdata.
Date: Wed, 3 Apr 2019 11:42:27 -0400 (EDT)

rekado pushed a commit to branch master
in repository guix.

commit b50c966087b908e046da06e330c01e6d7a1ae9ca
Author: Ricardo Wurmus <address@hidden>
Date:   Wed Apr 3 17:41:54 2019 +0200

    gnu: Add r-arrmdata.
    
    * gnu/packages/bioconductor.scm (r-arrmdata): New variable.
---
 gnu/packages/bioconductor.scm | 24 ++++++++++++++++++++++++
 1 file changed, 24 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index d033258..b949b89 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -778,6 +778,30 @@ datasets which are derived from the Allen Brain Atlas:
 All datasets are restricted to protein coding genes.")
     (license license:gpl2+)))
 
+(define-public r-arrmdata
+  (package
+    (name "r-arrmdata")
+    (version "1.18.0")
+    (source (origin
+              (method url-fetch)
+              ;; We cannot use bioconductor-uri here because this tarball is
+              ;; located under "data/experiment/" instead of "bioc/".
+              (uri (string-append "https://www.bioconductor.org/packages/";
+                                  "release/data/experiment/src/contrib/"
+                                  "ARRmData_" version ".tar.gz"))
+              (sha256
+               (base32
+                "0r1y3zn7ly4k3ngx55vfavn9s6aidbddlv2fbmj7hj3hvpslmyly"))))
+    (properties
+     `((upstream-name . "ARRmData")))
+    (build-system r-build-system)
+    (home-page "https://www.bioconductor.org/packages/ARRmData/";)
+    (synopsis "Example dataset for normalization of Illumina 450k methylation 
data")
+    (description
+     "This package provides raw beta values from 36 samples across 3 groups
+from Illumina 450k methylation arrays.")
+    (license license:artistic2.0)))
+
 (define-public r-hsmmsinglecell
   (package
     (name "r-hsmmsinglecell")



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