01/54: gnu: Add r-activepathways.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 8e6f63dd83b06962e155a88f101eda9c18f3ca7e
Author: Ricardo Wurmus <address@hidden>
Date:   Fri Dec 13 22:57:59 2019 +0100

    gnu: Add r-activepathways.
    
    * gnu/packages/bioconductor.scm (r-activepathways): New variable.
---
 gnu/packages/bioconductor.scm | 30 ++++++++++++++++++++++++++++++
 1 file changed, 30 insertions(+)

diff --git a/gnu/packages/bioconductor.scm b/gnu/packages/bioconductor.scm
index ca29fb5..1ef636d 100644
--- a/gnu/packages/bioconductor.scm
+++ b/gnu/packages/bioconductor.scm
@@ -6093,3 +6093,33 @@ simple somatic mutations (SNVs and Indels) in functional 
elements across the
 human genome.  ActiveDriverWGS detects coding and noncoding driver elements
 using whole genome sequencing data.")
     (license license:gpl3)))
+
+;; This is a CRAN package, but it depends on Bioconductor packages, so we put
+;; it here.
+(define-public r-activepathways
+  (package
+    (name "r-activepathways")
+    (version "1.0.1")
+    (source
+     (origin
+       (method url-fetch)
+       (uri (cran-uri "ActivePathways" version))
+       (sha256
+        (base32
+         "1xb0d1svmzw404pv8ja6wr4773k7x2lxkrzrayilvzqbfzj1wx20"))))
+    (properties
+     `((upstream-name . "ActivePathways")))
+    (build-system r-build-system)
+    (propagated-inputs
+     `(("r-data-table" ,r-data-table)
+       ("r-ggplot2" ,r-ggplot2)
+       ("r-metap" ,r-metap)))
+    (home-page "https://cran.r-project.org/web/packages/ActivePathways/";)
+    (synopsis "Multivariate pathway enrichment analysis")
+    (description
+     "This package represents an integrative method of analyzing multi omics
+data that conducts enrichment analysis of annotated gene sets.  ActivePathways
+uses a statistical data fusion approach, rationalizes contributing evidence
+and highlights associated genes, improving systems-level understanding of
+cellular organization in health and disease.")
+    (license license:gpl3)))