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127/265: gnu: r-rhtslib: Update to 1.18.0.
From: |
guix-commits |
Subject: |
127/265: gnu: r-rhtslib: Update to 1.18.0. |
Date: |
Sun, 15 Dec 2019 09:40:20 -0500 (EST) |
rekado pushed a commit to branch master
in repository guix.
commit 108c03a8eb1907b2ad2f9e055f896a6e91962c87
Author: Ricardo Wurmus <address@hidden>
Date: Sun Dec 15 15:10:02 2019 +0100
gnu: r-rhtslib: Update to 1.18.0.
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.0.
[propagated-inputs]: Add curl.
---
gnu/packages/bioinformatics.scm | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 9da6fe8..c545b81 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8313,21 +8313,22 @@ secondary structure and comparative analysis in R.")
(define-public r-rhtslib
(package
(name "r-rhtslib")
- (version "1.16.3")
+ (version "1.18.0")
(source
(origin
(method url-fetch)
(uri (bioconductor-uri "Rhtslib" version))
(sha256
(base32
- "1lmrfr32nrz36abn440kvzzck53y2320xjxqzs2jw7m2a9h3ryak"))))
+ "04inkq44lxwymqv51mxgaphasqjcdc9rl5p58imnrdm0kszs8prm"))))
(properties `((upstream-name . "Rhtslib")))
(build-system r-build-system)
;; Without this a temporary directory ends up in the Rhtslib.so binary,
;; which makes R abort the build.
(arguments '(#:configure-flags '("--no-staged-install")))
(propagated-inputs
- `(("r-zlibbioc" ,r-zlibbioc)))
+ `(("curl" ,curl)
+ ("r-zlibbioc" ,r-zlibbioc)))
(inputs
`(("zlib" ,zlib)))
(native-inputs
- 91/265: gnu: r-beachmat: Update to 2.2.1., (continued)
- 91/265: gnu: r-beachmat: Update to 2.2.1., guix-commits, 2019/12/15
- 108/265: gnu: r-dirichletmultinomial: Update to 1.28.0., guix-commits, 2019/12/15
- 112/265: gnu: r-keggrest: Update to 1.26.1., guix-commits, 2019/12/15
- 118/265: gnu: r-aroma-light: Update to 3.16.0., guix-commits, 2019/12/15
- 122/265: gnu: r-rhdf5: Update to 2.30.1., guix-commits, 2019/12/15
- 116/265: gnu: r-edaseq: Update to 2.20.0., guix-commits, 2019/12/15
- 110/265: gnu: r-genomicfiles: Update to 1.22.0., guix-commits, 2019/12/15
- 111/265: gnu: r-gage: Update to 2.36.0., guix-commits, 2019/12/15
- 117/265: gnu: r-deseq: Update to 1.38.0., guix-commits, 2019/12/15
- 128/265: gnu: r-zlibbioc: Update to 1.32.0., guix-commits, 2019/12/15
- 127/265: gnu: r-rhtslib: Update to 1.18.0.,
guix-commits <=
- 131/265: gnu: r-genomation: Update to 1.18.0., guix-commits, 2019/12/15
- 137/265: gnu: r-rtracklayer: Update to 1.46.0., guix-commits, 2019/12/15
- 141/265: gnu: r-rsamtools: Update to 2.2.1., guix-commits, 2019/12/15
- 139/265: gnu: r-summarizedexperiment: Update to 1.16.0., guix-commits, 2019/12/15
- 146/265: gnu: r-biobase: Update to 2.46.0., guix-commits, 2019/12/15
- 148/265: gnu: r-xvector: Update to 0.26.0., guix-commits, 2019/12/15
- 149/265: gnu: r-limma: Update to 3.42.0., guix-commits, 2019/12/15
- 165/265: gnu: r-annotationforge: Update to 1.28.0., guix-commits, 2019/12/15
- 160/265: gnu: r-shortread: Update to 1.44.0., guix-commits, 2019/12/15
- 101/265: gnu: r-snpstats: Update to 1.36.0., guix-commits, 2019/12/15