[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
branch staging updated (94c7f70 -> 7ba6d70)
|
From: |
guix-commits |
|
Subject: |
branch staging updated (94c7f70 -> 7ba6d70) |
|
Date: |
Wed, 18 Dec 2019 17:14:28 -0500 (EST) |
mbakke pushed a change to branch staging
in repository guix.
from 94c7f70 Merge branch 'master' into staging
adds 6212146 import: utils: Update docstring of 'recursive-import'.
adds 94fea21 gnu: hdf5@1.10: Update to 1.10.5.
adds 085bdfd gnu: guile-next: Update to 2.9.7.
adds 5f12df7 gnu: emacs-telega: Patch `ffplay` instead of propagating.
adds e19a539 gnu: emacs-telega: Correct path coding for `ffmpeg`.
adds c45fdf9 gnu: imlib2: Update to 1.6.1.
adds ba4fcea gnu: r-desolve: Update description.
adds e44c4cd gnu: Add r-bio3d.
adds db07641 gnu: Add r-bios2cor.
adds 59beb0d gnu: Add r-networkd3.
adds 303c7d1 gnu: Add r-aasea.
adds c20a81e gnu: Add r-fastmap.
adds 6e6fa95 gnu: r-shiny: Update to 1.4.0.
adds 595d950 gnu: Add r-abacus.
adds 8fed766 gnu: Add r-abc-rap.
adds 647ff4a gnu: Add r-abcadm.
adds 72e5c6e gnu: Add r-rglpk.
adds 8482249 gnu: Add r-abcdefba.
adds ae07172 gnu: Add r-abcrlda.
adds 3e33377 gnu: Add r-abemus.
adds 8990fc1 gnu: Add r-rintrojs.
adds 322e8d8 gnu: Add r-sysfonts.
adds 369e1bb gnu: Add r-showtextdb.
adds d793724 gnu: Add r-showtext.
adds 2ecd4e3 gnu: Add r-emojifont.
adds a99c4c7 gnu: Add r-abstractr.
adds bd74d7e gnu: Add r-abtest.
adds 72b67e0 gnu: Add r-activedriverwgs.
adds 0379a16 gnu: Add r-accept.
adds bba4ec6 gnu: Add r-smpracticals.
adds 5a5431e gnu: Add r-fgui.
adds f9d9c83 gnu: Add r-tcltk2.
adds c5b86d3 gnu: Add r-accrual.
adds 592d423 gnu: Add r-accrued.
adds 7e2e46c gnu: Add r-mda.
adds c909b71 gnu: Add r-elasticnet.
adds 7199d2a gnu: Add r-sparselda.
adds b8d52fe gnu: Add r-accsda.
adds b441dac gnu: Add r-ace2fastq.
adds ca1bc50 gnu: Add r-rngwell.
adds e6bf147 gnu: Add r-randtoolbox.
adds 390bc87 gnu: Add r-lhs.
adds 1442ca7 gnu: Add r-acebayes.
adds 43a70ed gnu: Add r-acet.
adds a8a7ba9 gnu: Add r-acfmperiod.
adds 3b89a8a gnu: Add r-gamlss-data.
adds 6cc356c gnu: Add r-gamlss.
adds 220557a gnu: Add r-acid.
adds 542590c gnu: Add r-acm4r.
adds fa82997 gnu: Add r-filematrix.
adds 73f055d gnu: Add r-acmeeqtl.
adds 2dc8723 gnu: Add r-acmer.
adds 1c2e3d7 gnu: Add r-r-huge.
adds 9f9520a gnu: bluez-alsa: Update to 2.0.0.
adds 4e410c9 gnu: linux-libre@4.19: Update to 4.19.89.
adds 3e9e242 gnu: linux-libre: Update to 5.3.16.
adds 8e6f63d gnu: Add r-activepathways.
adds 2fe1e66 gnu: Add r-r-filesets.
adds 217cd2e gnu: Add r-r-devices.
adds eff3e8a gnu: Add r-acnr.
adds 5d887a0 gnu: Add r-acopula.
adds cb35005 gnu: Add r-tuner.
adds 19172e1 gnu: Add r-seewave.
adds c12227d gnu: Add r-acousticndlcoder.
adds 56cba94 gnu: Add r-acp.
adds f18c054 gnu: Add r-ada.
adds 270529f gnu: Add r-genalg.
adds 6afc037 gnu: Add r-kernelfactory.
adds 6c2dcba gnu: Add r-dummies.
adds 3bc2c21 gnu: Add r-acrm.
adds c3f5989 gnu: Add r-treeclust.
adds 4b44bfb gnu: Add r-acrosstic.
adds d015db6 gnu: Add r-acrt.
adds 49e9a9a gnu: Add r-acs.
adds 07d958f gnu: Add r-acss-data.
adds 0ea0b2d gnu: Add r-acss.
adds ffecbcb gnu: Add r-acswr.
adds 6f0a5ab gnu: Add r-alabama.
adds 70c0dbe gnu: Add r-gdina.
adds d024207 gnu: Add r-actcd.
adds 6790adf gnu: Add r-ineq.
adds c090b99 gnu: Add r-actfrag.
adds 77a5bf9 gnu: Add r-fda.
adds 402dae0 gnu: Add r-actigraphy.
adds 7f960d8 gnu: Add r-activedriver.
adds 89d4f15 gnu: Add r-activitycounts.
adds 6f94a3e gnu: Add r-activityindex.
adds bbaab25 gnu: Add r-activpal.
adds a5d4dc7 gnu: Add r-activpalprocessing.
adds 5f08fa6 gnu: Add r-actogrammr.
adds 1830e03 gnu: Add r-expint.
adds 7faa053 gnu: Add r-actuar.
adds 6968aa2 gnu: Add r-bmp.
adds 7dd1fbf gnu: Add r-readbitmap.
adds 5e2ad37 gnu: Add r-imager.
adds 154555e gnu: Add r-acuityview.
adds 2a1fd51 gnu: Add r-adabag.
adds 0b13a75 gnu: Add r-adagio.
adds 09e9ad3 gnu: Add r-univoutl.
adds 5458490 gnu: Add r-tolerance.
adds 94ecf71 gnu: Add r-additivitytests.
adds 9906cb8 gnu: Add r-flexclust.
adds 86a760c gnu: Add r-biclust.
adds 9cd3ae8 gnu: Add r-icge.
adds 9fd2d4f gnu: Add r-depth.
adds ccc2c19 gnu: Add r-archetypes.
adds c717246 gnu: Add r-shapes.
adds c675080 gnu: Add r-anthropometry.
adds 5c0b5b8 gnu: Add r-adamethods.
adds e31ec53e import: cran: Recognize LGPL 2.1+.
adds af58b27 gnu: Add u-boot-pine64-lts.
adds db78fc0 gnu: bootloaders: Fix make-u-boot-sunxi64-package
cross-compilation.
adds 94de8d0 gnu: Add u-boot-pine64-lts-bootloader.
adds 5c1bd7b gnu: josm: Update to 15553.
adds e9d8dee gnu: emacs-doom-themes: Update to 2.1.6-2.
adds d900e1f gnu: Add htmlcxx.
adds 9d97a11 gnu: emacs-telega: Update to 0.5.3-1.
adds 428561a challenge: Fix type mismatch when comparing to a local
hash.
adds 5f9cd63 base64: Do not use (rnrs).
adds 178e550 gnu: bootloaders: Avoid #:select on (gnu packages …)
module.
adds 4ac5d4f gnu: Add gfortran-toolchain
adds 586e161 gnu: Add emacs-parseclj.
adds 47a9a59 gnu: Add emacs-parseedn.
adds 7d4d881 gnu: emacs-cider: Update to 0.23.0.
adds 4fb8e27 gnu: emacs-cider: Update home-page.
adds 58c3a4f gnu: java-svg-salamander: Return #t from snippet.
adds b5b6e74 gnu: Add r-idpmisc.
adds f431d5e guix: Upgrade to Bioconductor 3.10.
adds eb15df8 gnu: Add r-qqman.
adds e5d722f gnu: Add r-biocversion.
adds b4a22cc gnu: Add r-multidataset.
adds b4aee31 gnu: Add r-cytolib.
adds 15ac0c1 gnu: Add r-ncdfflow.
adds f5f4403 gnu: Add r-ggcyto.
adds 5aa7e88 gnu: Add r-ggplot-multistats.
adds 257b3b8 gnu: Add r-knn-covertree.
adds 9d1099e gnu: r-preprocesscore: Update to 1.48.0.
adds dbfce8f gnu: r-rgraphviz: Update to 2.30.0.
adds 0dd4b7d gnu: Add r-flowviz.
adds c8ab9eb gnu: Add r-flowclust.
adds f196451 gnu: Add r-rprotobuflib.
adds 82c1111 gnu: Add r-flowworkspace.
adds b700b9e gnu: Add r-flowstats.
adds 6aedc80 gnu: Add r-opencyto.
adds 7a62d5e gnu: Add r-cytoml.
adds 2c8433c gnu: r-depecher: Update to 1.2.0.
adds be5e4e9 gnu: r-biocgenerics: Update to 0.32.0.
adds 5d87f12 gnu: r-affycomp: Update to 1.62.0.
adds c2fa63e gnu: r-affycompatible: Update to 1.46.0.
adds f561421 gnu: r-affycontam: Update to 1.44.0.
adds 1693534 gnu: r-affycoretools: Update to 1.58.2.
adds ce5162d gnu: r-affxparser: Update to 1.58.0.
adds 7a11192 gnu: r-annotate: Update to 1.64.0.
adds ddd3673 gnu: r-hpar: Update to 1.28.0.
adds 2e73ea9 gnu: r-regioner: Update to 1.18.0.
adds 7ccbaf1 gnu: r-reportingtools: Update to 2.26.0.
adds 7778e91 gnu: r-geneplotter: Update to 1.64.0.
adds 79820b9 gnu: r-oligoclasses: Update to 1.48.0.
adds 084c651 gnu: r-oligo: Update to 1.50.0.
adds bcf711b gnu: r-qvalue: Update to 2.18.0.
adds 73883f0 gnu: r-diffbind: Update to 2.14.0.
adds ba74434 gnu: r-ripseeker: Update to 1.26.0.
adds 16d49c2 gnu: r-multtest: Update to 2.42.0.
adds 70eb483 gnu: r-graph: Update to 1.64.0.
adds cf8968d gnu: r-chippeakanno: Update to 3.20.0.
adds b6c2f09 gnu: r-marray: Update to 1.64.0.
adds 8341f70 gnu: r-cghbase: Update to 1.46.0.
adds 8f2a4ea gnu: r-cghcall: Update to 2.48.0.
adds 23ce5ad gnu: r-qdnaseq: Update to 1.22.0.
adds d772282 gnu: r-bayseq: Update to 2.20.0.
adds b0897fb gnu: r-chipcomp: Update to 1.16.0.
adds 88af704 gnu: r-riboprofiling: Update to 1.16.0.
adds 595b6c9 gnu: r-riboseqr: Update to 1.20.0.
adds bb84174 gnu: r-interactionset: Update to 1.14.0.
adds b701ed6 gnu: r-genomicinteractions: Update to 1.20.0.
adds b2b5b03 gnu: r-ctc: Update to 1.60.0.
adds ab7f3cb gnu: r-goseq: Update to 1.38.0.
adds 728571f gnu: r-glimma: Update to 1.14.0.
adds 9c07114 gnu: r-rots: Update to 1.14.0.
adds 565bb84 gnu: r-plgem: Update to 1.58.0.
adds 74bb4cd gnu: r-inspect: Update to 1.16.0.
adds 2d86dc2 gnu: r-dnabarcodes: Update to 1.16.0.
adds efd0934 gnu: r-ruvseq: Update to 1.20.0.
adds 12e2aa9 gnu: r-biocneighbors: Update to 1.4.1.
adds c88448d gnu: r-biocsingular: Update to 1.2.0.
adds 2e17cbd gnu: r-savr: Update to 1.24.0.
adds 84825e5 gnu: r-chipexoqual: Update to 1.10.0.
adds eb3fd38 gnu: r-copynumber: Update to 1.26.0.
adds bba70cd gnu: r-dnacopy: Update to 1.60.0.
adds 96030bf gnu: r-deds: Update to 1.60.0.
adds a9649c4 gnu: r-ebseq: Update to 1.26.0.
adds 153dc51 gnu: r-lpsymphony: Update to 1.14.0.
adds 0383bd0 gnu: r-ihw: Update to 1.14.0.
adds a5cc1f1 gnu: r-icobra: Update to 1.14.0.
adds dc5237f gnu: r-mast: Update to 1.12.0.
adds 9732e69 gnu: r-monocle: Update to 2.14.0.
adds 81a125c gnu: r-noiseq: Update to 2.30.0.
adds 2f223b2 gnu: r-scdd: Update to 1.10.0.
adds 048a43d gnu: r-scone: Update to 1.10.0.
adds db85744 gnu: r-geoquery: Update to 2.54.1.
adds 418d721 gnu: r-illuminaio: Update to 0.28.0.
adds 3381dc4 gnu: r-mzr: Update to 2.20.0.
adds d12328f gnu: r-protgenerics: Update to 1.18.0.
adds 2a6ce98 gnu: r-sva: Update to 3.34.0.
adds 065c305 gnu: r-methylkit: Update to 1.12.0.
adds 51ca216 gnu: r-affyio: Update to 1.56.0.
adds 32f6059 gnu: r-affy: Update to 1.64.0.
adds 746e1f0 gnu: r-copywriter: Update to 2.18.0.
adds 43058ca gnu: r-chipseq: Update to 1.36.0.
adds af87ac3 gnu: r-annotationfilter: Update to 1.10.0.
adds dc9d483 gnu: r-vsn: Update to 3.54.0.
adds 758dfc6 gnu: r-mzid: Update to 1.24.0.
adds c81ccd3 gnu: r-delayedmatrixstats: Update to 1.8.0.
adds 964634f gnu: r-scran: Update to 1.14.5.
adds bf23416 gnu: r-scater: Update to 1.14.5.
adds 376f2f3 gnu: r-singlecellexperiment: Update to 1.8.0.
adds 8804e4b gnu: r-beachmat: Update to 2.2.1.
adds 1f5d262 gnu: r-rhdf5lib: Update to 1.8.0.
adds 7557bd0 gnu: r-hdf5array: Update to 1.14.1.
adds 8db2915 gnu: r-fithic: Update to 1.12.0.
adds 0a16021 gnu: r-hitc: Update to 1.30.0.
adds 2832999 gnu: r-gwascat: Update to 2.18.0.
adds 2e13f10 gnu: r-sushi: Update to 1.24.0.
adds d57b6b4 gnu: r-gviz: Update to 1.30.0.
adds cfa93a3 gnu: r-gqtlstats: Update to 1.18.0.
adds 6fff104 gnu: r-ldblock: Update to 1.16.0.
adds 14eb097 gnu: r-snpstats: Update to 1.36.0.
adds 67d4fd5 gnu: r-erma: Update to 1.2.0.
adds 89a4169 gnu: r-gqtlbase: Update to 1.18.0.
adds 81600df gnu: r-ggbio: Update to 1.34.0.
adds 866810e gnu: r-biovizbase: Update to 1.34.1.
adds e890326 gnu: r-organismdbi: Update to 1.28.0.
adds e107f3d gnu: r-ensembldb: Update to 2.10.2.
adds 2edb116 gnu: r-dirichletmultinomial: Update to 1.28.0.
adds dac706c gnu: r-complexheatmap: Update to 2.2.0.
adds 48c7ee9 gnu: r-genomicfiles: Update to 1.22.0.
adds b342b20 gnu: r-gage: Update to 2.36.0.
adds fedba48 gnu: r-keggrest: Update to 1.26.1.
adds c21bf90 gnu: r-fastseg: Update to 1.32.0.
adds 6339ea2 gnu: r-annotationhub: Update to 2.18.0.
adds 2beffcb gnu: r-interactivedisplaybase: Update to 1.24.0.
adds 0a6704e gnu: r-edaseq: Update to 2.20.0.
adds 783bbe3 gnu: r-deseq: Update to 1.38.0.
adds 3ccf1e3 gnu: r-aroma-light: Update to 3.16.0.
adds 597aeb8 gnu: r-msnid: Update to 1.20.0.
adds 5899399 gnu: r-msnbase: Update to 2.12.0.
adds 4e5c217 gnu: r-pcamethods: Update to 1.78.0.
adds 126539d gnu: r-rhdf5: Update to 2.30.1.
adds 3a0229e gnu: r-tximport: Update to 1.14.0.
adds 3964f2c gnu: r-mutationalpatterns: Update to 1.12.0.
adds f375d74 gnu: r-rcas: Update to 1.12.0.
adds 7b6c008 gnu: r-bamsignals: Update to 1.18.0.
adds 108c03a gnu: r-rhtslib: Update to 1.18.0.
adds 2f15045 gnu: r-zlibbioc: Update to 1.32.0.
adds a5f9b30 gnu: r-motifrg: Update to 1.30.0.
adds a979019 gnu: r-seqlogo: Update to 1.52.0.
adds e06b34e gnu: r-genomation: Update to 1.18.0.
adds b590742 gnu: r-seqpattern: Update to 1.18.0.
adds bca1c45 gnu: r-impute: Update to 1.60.0.
adds e3a2b96 gnu: r-bsgenome: Update to 1.54.0.
adds 323f42b gnu: r-topgo: Update to 2.37.0.
adds 9fec340 gnu: r-genomicfeatures: Update to 1.38.0.
adds 15187da gnu: r-rtracklayer: Update to 1.46.0.
adds 55e515d gnu: r-genomicalignments: Update to 1.22.1.
adds 264db03 gnu: r-summarizedexperiment: Update to 1.16.0.
adds 4ada4fb gnu: r-delayedarray: Update to 0.12.0.
adds e1d681e gnu: r-rsamtools: Update to 2.2.1.
adds 15cd3f6 gnu: r-biostrings: Update to 2.54.0.
adds 5854a4a gnu: r-biocparallel: Update to 1.20.0.
adds 68a9d9f gnu: r-biomart: Update to 2.42.0.
adds de9ae3e gnu: r-annotationdbi: Update to 1.48.0.
adds 8d1c366 gnu: r-biobase: Update to 2.46.0.
adds 0202b13 gnu: r-genomicranges: Update to 1.38.0.
adds da6edb1 gnu: r-xvector: Update to 0.26.0.
adds eea491e gnu: r-limma: Update to 3.42.0.
adds 8f5d2c3 gnu: r-variantannotation: Update to 1.32.0.
adds da03fa3 gnu: r-edger: Update to 3.28.0.
adds 937f3a4 gnu: r-genomeinfodb: Update to 1.22.0.
adds d272348 gnu: r-iranges: Update to 2.20.1.
adds d37daf8 gnu: r-s4vectors: Update to 0.24.1.
adds 7758d52 gnu: r-bioccheck: Update to 1.22.0.
adds ef96154 gnu: r-biocstyle: Update to 2.14.2.
adds 74d59b6 gnu: r-biocviews: Update to 1.54.0.
adds f8f8156 gnu: r-grohmm: Update to 1.20.0.
adds 58fd68b gnu: r-systempiper: Update to 1.20.0.
adds f29c9f0 gnu: r-shortread: Update to 1.44.0.
adds 5457308 gnu: r-gostats: Update to 2.52.0.
adds 4afcf94 gnu: r-category: Update to 2.52.1.
adds d266184 gnu: r-gseabase: Update to 1.48.0.
adds 33a2acb gnu: r-rbgl: Update to 1.62.1.
adds 12c4555 gnu: r-annotationforge: Update to 1.28.0.
adds ebc81e3 gnu: r-dexseq: Update to 1.32.0.
adds 867018e gnu: r-deseq2: Update to 1.26.0.
adds 0726645 gnu: r-genefilter: Update to 1.68.0.
adds 989be6d gnu: r-unifiedwmwqpcr: Update to 1.22.0.
adds 0b0906c gnu: r-htqpcr: Update to 1.40.0.
adds e2f481d gnu: r-variancepartition: Update to 1.16.0.
adds e13f977 gnu: r-wavetiling: Update to 1.28.0.
adds 053a212 gnu: r-genomegraphs: Update to 1.46.0.
adds 6f5415d gnu: r-variantfiltering: Update to 1.22.0.
adds cb734c6 gnu: r-timeseriesexperiment: Update to 1.4.0.
adds c0cba4b gnu: r-wavcluster: Update to 2.20.0.
adds 02c18ab gnu: r-reqon: Update to 1.32.0.
adds 2223bbc gnu: r-seqbias: Update to 1.34.0.
adds 8b941a5 gnu: r-bigmelon: Update to 1.12.0.
adds f5ef7dd gnu: r-gdsfmt: Update to 1.22.0.
adds 9eade22 gnu: r-watermelon: Update to 1.30.0.
adds 3672b74 gnu: r-roc: Update to 1.62.0.
adds 33ce50e gnu: r-genie3: Update to 1.8.0.
adds 42b0629 gnu: r-cicero: Update to 1.4.0.
adds 51ffac4 gnu: r-rcistarget: Update to 1.6.0.
adds 4930a89 gnu: r-mixomics: Update to 6.10.6.
adds ba71567 gnu: r-flowsom: Update to 1.18.0.
adds 8042087 gnu: r-flowmeans: Update to 1.46.0.
adds b2a2f32 gnu: r-flowcore: Update to 1.52.1.
adds 8ad6b23 gnu: r-consensusclusterplus: Update to 1.50.0.
adds 482ba0b gnu: r-flowutils: Update to 1.50.0.
adds 4390788 gnu: r-rsubread: Update to 2.0.0.
adds 7000725 gnu: r-annotatr: Update to 1.12.1.
adds 7d29dc9 gnu: r-biosigner: Update to 1.14.0.
adds 643aaf7 gnu: r-ropls: Update to 1.18.0.
adds 8d76627 gnu: r-birta: Update to 1.30.0.
adds a9e5145 gnu: r-birewire: Update to 3.18.0.
adds 11db82b gnu: r-rqc: Update to 1.20.0.
adds a15e52e gnu: r-quasr: Update to 1.26.0.
adds 3dd2450 gnu: r-rhisat2: Update to 1.2.0.
adds 2cebc5d gnu: r-sgseq: Update to 1.20.0.
adds 02684be gnu: r-rbowtie: Update to 1.26.0.
adds 049de95 gnu: r-iclusterplus: Update to 1.22.0.
adds 97e3170 gnu: r-biocfilecache: Update to 1.10.2.
adds 4f0d858 gnu: r-arrmnormalization: Update to 1.26.0.
adds 82d87ce gnu: r-progeny: Update to 1.8.0.
adds c5a4c5a gnu: r-rbowtie2: Update to 1.8.0.
adds 18b93e0 gnu: r-zfpkm: Update to 1.8.0.
adds 316bcd0 gnu: r-webbioc: Update to 1.58.0.
adds 1a2569e gnu: r-widgettools: Update to 1.64.0.
adds 25db561 gnu: r-wiggleplotr: Update to 1.10.1.
adds 92f4053 gnu: r-wrench: Update to 1.4.0.
adds 4fb5234 gnu: r-xcms: Update to 3.8.1.
adds a07ee25 gnu: r-massspecwavelet: Update to 1.52.0.
adds 1f0101a gnu: r-xbseq: Update to 1.18.0.
adds f0dd0fe gnu: r-roar: Update to 1.22.0.
adds 94fdea1 gnu: r-yarn: Update to 1.12.0.
adds eb697ff gnu: r-quantro: Update to 1.20.0.
adds 87942b7 gnu: r-yaqcaffy: Update to 1.46.0.
adds a87aa2f gnu: r-simpleaffy: Update to 2.62.0.
adds 2f90bab gnu: r-gcrma: Update to 2.58.0.
adds 580e434 gnu: r-yapsa: Update to 1.12.0.
adds 4f8e048 gnu: r-somaticsignatures: Update to 2.22.0.
adds cf0a1cb gnu: r-gtrellis: Update to 1.18.0.
adds 3796e24 gnu: r-yamss: Update to 1.12.0.
adds ca7192a gnu: r-ebimage: Update to 4.28.1.
adds 3a35d27 gnu: r-aucell: Update to 1.8.0.
adds 50e6f76 gnu: r-allelicimbalance: Update to 1.24.0.
adds eda4908 gnu: r-annotationtools: Update to 1.60.0.
adds 3a731c8 gnu: r-annotationfuncs: Update to 1.36.0.
adds 307667c gnu: r-abaenrichment: Update to 1.16.0.
adds 4997e02 gnu: r-gofuncr: Update to 1.6.0.
adds 36aecb2 gnu: r-atacseqqc: Update to 1.10.1.
adds e89f16e gnu: r-genomicscores: Update to 1.10.0.
adds dda936c gnu: r-motifstack: Update to 1.30.0.
adds 35a1b3e gnu: r-motiv: Update to 1.42.0.
adds 6dfe505 gnu: r-rgadem: Update to 2.34.0.
adds 32b471f gnu: r-bacon: Update to 1.14.0.
adds aef4b34 gnu: r-abseqr: Update to 1.4.0.
adds 344eb4c gnu: r-a4: Update to 1.34.0.
adds 85c945a gnu: r-a4base: Update to 1.34.0.
adds 977a780 gnu: r-a4reporting: Update to 1.34.0.
adds d6859c7 gnu: r-a4preproc: Update to 1.34.0.
adds 102b982 gnu: r-a4classif: Update to 1.34.0.
adds 4ed18dd gnu: r-a4core: Update to 1.34.0.
adds fc4a9dd gnu: r-annaffy: Update to 1.58.0.
adds 6374984 gnu: r-mlinterfaces: Update to 1.66.0.
adds 08c01b7 gnu: r-clusterprofiler: Update to 3.14.0.
adds 0654a9b gnu: r-enrichplot: Update to 1.6.0.
adds 166b3c2 gnu: r-dose: Update to 3.12.0.
adds b4e1268 gnu: r-fgsea: Update to 1.12.0.
adds 869965d gnu: r-sigpathway: Update to 1.54.0.
adds 5ed7675 gnu: r-anota: Update to 1.34.0.
adds c245ec3 gnu: r-gosemsim: Update to 2.12.0.
adds 9f21862 gnu: r-heatplus: Update to 2.32.0.
adds 9b72bbf gnu: r-varianttools: Update to 1.28.0.
adds a18f325 gnu: r-triform: Update to 1.28.0.
adds 1b890c3 gnu: r-ioniser: Update to 2.10.0.
adds a2877d6 gnu: r-linnorm: Update to 2.10.0.
adds 8f7bc87 gnu: r-lumi: Update to 2.38.0.
adds b57cffb gnu: r-methylumi: Update to 2.32.0.
adds dfd4287 gnu: r-minfi: Update to 1.32.0.
adds 4efdac5 gnu: r-bumphunter: Update to 1.28.0.
adds b4ee414 gnu: r-siggenes: Update to 1.60.0.
adds 6e10ac0 gnu: r-destiny: Update to 3.0.0.
adds 614a1e3 gnu: info-reader: Fix cross-compilation.
adds 9711589 gnu: Add theorafile.
adds a13116b gnu: texinfo: Add missing include.
adds 514001e gnu: abcl: Update to 1.6.0.
adds 6a65185 gnu: diffoscope: Update to 133.
adds 9a27551 gnu: emacs-doom-modeline: Update to 2.8.2.
adds b425426 gnu: emacs-async: Update to 1.9.4.
adds 0089552 gnu: emacs-direnv: Update to 2.0.0.
adds 12bf15f gnu: emacs-fill-column-indicator: Update to 1.90.
adds 6694b67 gnu: emacs-undercover: Update to 0.6.1.
adds 44e7222 gnu: emacs-paren-face: Update to 1.0.4.
adds 1bd94e3 gnu: emacs-rich-minority: Update to 1.0.3.
adds 0da921d gnu: emacs-ob-ipython: Update to 20180224.
adds 503f9aa gnu: emacs-jedi: Update to 0.2.8.
adds e3c4fca gnu: emacs-org-trello: Update to 0.8.1.
adds 317cc18 gnu: emacs-elfeed: Update to 3.3.0.
adds 5487dda gnu: emacs-find-file-in-project: Update to 5.7.7.
adds bc685e1 gnu: diffoscope: Add support for zstd compression.
adds 467ad21 gnu: emacs-rainbow-delimiters: Update to 2.1.4.
adds fb4b5d2 gnu: emacs-writeroom: Update to 3.9.
adds 426ab00 gnu: emacs-helm: Update to 3.6.0.
adds 638850e gnu: emacs-helm-org: Update to 1.0-2.
adds 6b714d8 gnu: emacs-htmlize: Update to 1.55.
adds 0fce0b2 gnu: emacs-telega: Add comment about obtaining version.
adds 6704e88 gnu: guile-gcrypt: Update to 0.2.1.
adds 4dbd704 gnu: Add lolcat
adds 5d1601e gnu: criu: Update to 3.13.
adds 099ce5d gnu: Add papirus-icon-theme.
adds e67118a gnu: Add emacs-hide-mode-line.
adds 0128a9d gnu: r-rgooglemaps: Update to 1.4.5.
adds 3dc1d43 gnu: r-amap: Update to 0.8-18.
adds c9a0f61 gnu: r-rmysql: Update to 0.10.18.
adds a3b51a3 gnu: r-broom: Update to 0.5.3.
adds c79e80f gnu: r-mice: Update to 3.7.0.
adds a8e8a10 gnu: r-tinytex: Update to 0.18.
adds 2beb585 gnu: r-sna: Update to 2.5.
adds 98ce8a3 gnu: r-renv: Update to 0.9.2.
adds cceb86f gnu: r-rdpack: Update to 0.11-1.
adds 31fa45b gnu: r-deriv: Update to 4.0.
adds f92c0c1 gnu: r-multcomp: Update to 1.4-11.
adds afc1ff2 gnu: r-performance: Update to 0.4.2.
adds d4e8f20 gnu: r-lmertest: Update to 3.1-1.
adds b744174 gnu: r-fmsb: Update to 0.7.0.
adds 5f99ffb gnu: r-tm: Update to 0.7-7.
adds 126f027 gnu: r-tidytree: Update to 0.3.1.
adds 074c698 gnu: r-spam: Update to 2.5-1.
adds a2e3f27 gnu: r-nlme: Update to 3.1-143.
adds 2947e33 gnu: r-plyr: Update to 1.8.5.
adds 6c2887e gnu: r-dbi: Update to 1.1.0.
adds d2d7259 gnu: r-rmarkdown: Update to 2.0.
adds 804e068 gnu: r-segmented: Update to 1.1-0.
adds 468fb90 gnu: r-sparsem: Update to 1.78.
adds 155d48f gnu: r-glmnet: Update to 3.0-2.
adds 34982a4 gnu: r-quantreg: Update to 5.54.
adds e703f6d gnu: Add pinfo.
adds 00386d3 gnu: Add emacs-eww-lnum.
adds 90ee17c gnu: Add python-sphinx-intl
adds 2c82d4a gnu: ccls: Configure using -isystem for header files.
adds 3c80b07 gnu: ccls: Adjust indentation
adds 223236f gnu: guile-studio: Update to 0.0.2.
adds d0ef3a0 gnu: libreoffice: Update to 6.3.4.2.
adds 8c4c5bf Revert "gnu: info-reader: Fix cross-compilation."
adds 709f839 gnu: emacs-helm-fish-completion: Update to 0.2.
adds c6a7fe7 gnu: yoshimi: Update to 1.6.1.
adds 88ca402 gnu: iw: Fix cross-compilation.
adds 4642944 gnu: psmisc: Fix cross-compilation.
adds d0a26d0 gnu: gash: Update to 0.2.0.
adds dbcef44 gnu: Add python-iocapture.
adds db6bd84 gnu: Add python-argh.
adds 792c3db Revert "gnu: ccls: Adjust indentation"
adds 1171c4b Revert "gnu: ccls: Configure using -isystem for header
files."
adds 27d0834 gnu: guix-data-service: Update to 0.0.1-8.a019a5e.
adds 4ade2dd gnu: python-pyfaidx: Update to 0.5.7.
adds c70a019 gnu: Add python-fsspec.
adds 86c7ca0 gnu: python-dask: Update to 2.9.0.
adds b7716f1 gnu: Remove python2-dask.
adds cfd83f3 gnu: Add python-gffutils.
adds 94f9c0c gnu: python-gffutils: Update description.
adds b9676a4 gnu: libsecp256k1: Update to 20191213.
adds d08c3e5 gnu: electron-cash: Update to 4.0.12.
adds e5c32a3 gnu: electron-cash: Use substitute-keyword-arguments from
electrum.
adds ca82507 gnu: pinfo: Use a source file name.
adds d1df755 gnu: brasero: Hard-code name in source uri.
adds ba549e1 gnu: brasero: Fix-up inputs.
adds fb9399e gnu: brasero: Update home-page.
adds ef2c55b gnu: libidl: Set upstream name.
adds 80a06e6 gnu: libidl: Hard-code name in source uri.
adds a315afa gnu: dia: Fix-up inputs.
adds 4b3e91d gnu: dia: Don't override bootstrap phase.
adds 914c8cd gnu: dia: Fix version number.
adds 5a0beca gnu: shotwell: Clean-up inputs.
adds 5ba865a gnu: Add r-gee.
adds 3b21f58 gnu: Add r-tab.
adds 8a51ddc gnu: r-bh: Update to 1.72.0-1.
adds f98480a gnu: r-seurat: Update to 3.1.2.
adds f87c672 gnu: r-ordinal: Update to 2019.12-10.
adds 4d6ccb0 gnu: r-argparser: Update to 0.6.
adds 6e96326 gnu: r-ttr: Update to 0.23-6.
adds f6e7582 gnu: r-dvmisc: Update to 1.1.4.
adds cd0e281 gnu: r-ggeffects: Update to 0.14.0.
adds 5722022 gnu: r-repr: Update to 1.0.2.
adds aaa74ee gnu: r-pracma: Update to 2.2.9.
adds 3e31379 gnu: python-elasticsearch: Update to 7.1.0.
adds a7c75b8 gnu: gfortran: change to a hidden package
adds 2963ae8 gnu: txr: Update to 229.
adds 328dd9b gnu: Add love-nuklear.
adds 595036d gnu: Add libsbml.
adds 5828dd0 gnu: Add r-poibin.
adds c686e53 gnu: Add r-diagram.
adds 96afb6c gnu: Add r-lim.
adds 59d485e gnu: Add r-shinycssloaders.
adds 1028bf0 gnu: Add r-rsvg.
adds d11d6fe gnu: Add r-bgmix.
adds 75eb114 gnu: Add r-bgx.
adds 6bd50ac gnu: Add r-bhc.
adds de9374b gnu: Add r-bicare.
adds 40fe63a gnu: Add r-bifet.
adds e823337 gnu: Add r-rsbml.
adds 75a8bb3 gnu: Add r-hypergraph.
adds 5aef09b gnu: Add r-hyperdraw.
adds 6ca6f86 gnu: Add r-biggr.
adds 820373d gnu: Add r-bigmemoryextras.
adds d38775b gnu: Add r-bigpint.
adds 991554f gnu: Add r-chemminer.
adds 48bcbef gnu: Add r-bioassayr.
adds 29fd736 gnu: Add r-biobroom.
adds 0bb64e1 gnu: linux-libre@4.14: Update to 4.14.159.
adds a15adac gnu: linux-libre@4.19: Update to 4.19.90.
adds ef6856e gnu: linux-libre: Update to 5.3.17.
adds 356a79b swh: Fix API call for getting origin.
adds c57b841 gnu: python-ecdsa: Update to 0.14.1.
adds 92fe251 gnu: python-ecdsa: Actually run the test suite.
adds 8fd6049 gnu: cmst: Update to 2019.01.13.
adds 7e9d6f0 gnu: libmicrohttpd: Update to 0.9.69.
adds 6f15ea2 gnu: Add r-reactome-db.
adds ff1146b gnu: Add r-curatedtcgadata.
adds 3eacc8f gnu: Add r-influencer.
adds c373223 gnu: Add r-graphite.
adds f388834 gnu: Add r-reactomepa.
adds 21afe92 gnu: Add r-ebarrays.
adds f180be2 gnu: Add r-bioccasestudies.
adds 49f0860 gnu: Add r-biocgraph.
adds 244270e gnu: Add r-experimenthub.
adds 0678479 gnu: Add r-multiassayexperiment.
adds c2b36a0 gnu: Add r-bioconcotk.
adds 4d12c1e gnu: Add r-biocor.
adds 4a18112 gnu: Add r-biocpkgtools.
adds 43b66e3 gnu: Add r-biocset.
adds 0156297 gnu: Add r-biocworkflowtools.
adds 77e2de3 gnu: Add r-biodist.
adds 96c158b gnu: linux-libre: Update deblob scripts.
adds 7ebf4c4 gnu: linux-libre: Update to 5.3.18.
adds 8e53fe2 gnu: Remove uses of deprecated Qemu network configuration.
adds 17ac8bb gnu: darktable: Fix build failure.
adds 6b1e6b5 gnu: darktable: Remove redundant inputs.
adds fe3110a gnu: darktable: Update to 2.6.3.
adds ab7010a gexp: Allow character literals in GEXP->SEXP.
adds 9077cf6 gnu: libdbi-drivers: Adapt to multiple-output MariaDB.
adds 6afea74 guix: swh: Fix example URI in comment for <origin>.
new 7ba6d70 Merge branch 'master' into staging
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/guix.texi | 28 +-
gnu/bootloader/u-boot.scm | 8 +-
gnu/build/vm.scm | 10 +-
gnu/local.mk | 1 -
gnu/packages/audio.scm | 15 +-
gnu/packages/bioconductor.scm | 2014 +++++++++++---
gnu/packages/bioinformatics.scm | 509 ++--
gnu/packages/bootloaders.scm | 14 +-
gnu/packages/commencement.scm | 13 +
gnu/packages/connman.scm | 4 +-
gnu/packages/cran.scm | 3088 +++++++++++++++++++++-
gnu/packages/crypto.scm | 6 +-
gnu/packages/databases.scm | 48 +-
gnu/packages/diffoscope.scm | 13 +-
gnu/packages/emacs-xyz.scm | 342 ++-
gnu/packages/finance.scm | 31 +-
gnu/packages/game-development.scm | 32 +
gnu/packages/games.scm | 39 +
gnu/packages/gcc.scm | 35 +-
gnu/packages/geo.scm | 4 +-
gnu/packages/gnome-xyz.scm | 34 +
gnu/packages/gnome.scm | 73 +-
gnu/packages/gnunet.scm | 4 +-
gnu/packages/gnupg.scm | 4 +-
gnu/packages/graph.scm | 4 +-
gnu/packages/guile-xyz.scm | 108 +-
gnu/packages/guile.scm | 4 +-
gnu/packages/image.scm | 4 +-
gnu/packages/java.scm | 9 +-
gnu/packages/libreoffice.scm | 4 +-
gnu/packages/linux.scm | 47 +-
gnu/packages/lisp.scm | 4 +-
gnu/packages/maths.scm | 7 +-
gnu/packages/music.scm | 4 +-
gnu/packages/patches/hdf5-mpi-deprecations.patch | 61 -
gnu/packages/photo.scm | 20 +-
gnu/packages/python-crypto.scm | 16 +-
gnu/packages/python-web.scm | 4 +-
gnu/packages/python-xyz.scm | 125 +-
gnu/packages/shells.scm | 19 +-
gnu/packages/sphinx.scm | 24 +
gnu/packages/statistics.scm | 44 +-
gnu/packages/texinfo.scm | 59 +-
gnu/packages/video.scm | 41 +-
gnu/packages/virtualization.scm | 38 +-
gnu/packages/web.scm | 39 +-
gnu/system/vm.scm | 5 +-
gnu/tests.scm | 2 +-
guix/base64.scm | 18 +-
guix/build-system/r.scm | 2 +-
guix/gexp.scm | 2 +-
guix/import/cran.scm | 5 +-
guix/import/utils.scm | 2 +-
guix/repl.scm | 2 +-
guix/scripts/challenge.scm | 5 +-
guix/swh.scm | 4 +-
tests/gexp.scm | 6 +
57 files changed, 6020 insertions(+), 1087 deletions(-)
delete mode 100644 gnu/packages/patches/hdf5-mpi-deprecations.patch
- branch staging updated (94c7f70 -> 7ba6d70),
guix-commits <=