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02/06: gnu: tabixpp: Update to 1.1.0.
From: |
guix-commits |
Subject: |
02/06: gnu: tabixpp: Update to 1.1.0. |
Date: |
Thu, 9 Jan 2020 07:52:29 -0500 (EST) |
efraim pushed a commit to branch master
in repository guix.
commit 612d6a8e5b65774cbebf5b26515ffa9fbba57507
Author: Efraim Flashner <address@hidden>
AuthorDate: Wed Jan 8 11:30:36 2020 +0200
gnu: tabixpp: Update to 1.1.0.
* gnu/packages/bioinformatics.scm (tabixpp): Update to 1.1.0.
[source]: Add snippet to remove vendored library.
[arguments]: Adjust custom 'build phase to fix INCLUDES.
---
gnu/packages/bioinformatics.scm | 9 +++++++--
1 file changed, 7 insertions(+), 2 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 28c5dd1..f801639 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -14869,7 +14869,7 @@ mutations from scRNA-Seq data.")
(define-public tabixpp
(package
(name "tabixpp")
- (version "1.0.0")
+ (version "1.1.0")
(source (origin
(method git-fetch)
(uri (git-reference
@@ -14877,7 +14877,11 @@ mutations from scRNA-Seq data.")
(commit (string-append "v" version))))
(file-name (git-file-name name version))
(sha256
- (base32 "08vx6nsipk971cyr8z53rnzwkvlld63kcn1fw0pwddynz91xfny8"))))
+ (base32 "1k2a3vbq96ic4lw72iwp5s3mwwc4xhdffjj584yn6l9637q9j1yd"))
+ (modules '((guix build utils)))
+ (snippet
+ `(begin
+ (delete-file-recursively "htslib") #t))))
(build-system gnu-build-system)
(inputs
`(("htslib" ,htslib)
@@ -14893,6 +14897,7 @@ mutations from scRNA-Seq data.")
(let ((htslib-ref (assoc-ref inputs "htslib")))
(invoke "make"
(string-append "HTS_LIB=" htslib-ref "/lib/libhts.a")
+ (string-append "INCLUDES= -I" htslib-ref
"/include/htslib")
"HTS_HEADERS=" ; No need to check for headers here.
(string-append "LIBPATH=-L. -L" htslib-ref
"/include")))))
(replace 'install
- branch master updated (1e3bbd9 -> 2604ecb), guix-commits, 2020/01/09
- 01/06: gnu: bwa: Install static library., guix-commits, 2020/01/09
- 04/06: gnu: fastahack: Update to 1.0.0., guix-commits, 2020/01/09
- 02/06: gnu: tabixpp: Update to 1.1.0.,
guix-commits <=
- 03/06: gnu: Add intervaltree., guix-commits, 2020/01/09
- 06/06: gnu: smithwaterman: Update to 0.0.0-2.2610e25., guix-commits, 2020/01/09
- 05/06: gnu: vcflib: Update to 1.0.1., guix-commits, 2020/01/09