02/02: gnu: bedtools: Update to 2.29.2.

[guix-commits]

rekado pushed a commit to branch master
in repository guix.

commit 6c32e9b4dc7e7cbf6580e7b97d1c526cb15c6099
Author: Ricardo Wurmus <address@hidden>
AuthorDate: Thu Feb 27 17:37:32 2020 +0100

    gnu: bedtools: Update to 2.29.2.
    
    * gnu/packages/bioinformatics.scm (bedtools): Update to 2.29.2.
    [native-inputs]: Replace python-2 with python-wrapper.
    [license]: Change to Expat.
---
 gnu/packages/bioinformatics.scm | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 51ffa00..2b13ad4 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -410,7 +410,7 @@ computational cluster.")
 (define-public bedtools
   (package
     (name "bedtools")
-    (version "2.27.1")
+    (version "2.29.2")
     (source (origin
               (method url-fetch)
               (uri (string-append 
"https://github.com/arq5x/bedtools2/releases/";
@@ -418,7 +418,7 @@ computational cluster.")
                                   "bedtools-" version ".tar.gz"))
               (sha256
                (base32
-                "1ndg5yknrxl4djx8ddzgk12rrbiidfpmkkg5z3f95jzryfxarhn8"))))
+                "0m3hk6548846w83a9s5drsczvy67n2azx41kj71n03klb2gbzwg3"))))
     (build-system gnu-build-system)
     (arguments
      '(#:test-target "test"
@@ -427,7 +427,8 @@ computational cluster.")
        #:phases
        (modify-phases %standard-phases
          (delete 'configure))))
-    (native-inputs `(("python" ,python-2)))
+    (native-inputs
+     `(("python" ,python-wrapper)))
     (inputs
      `(("samtools" ,samtools)
        ("zlib" ,zlib)))
@@ -440,7 +441,7 @@ genome arithmetic: that is, set theory on the genome.  For 
example, bedtools
 allows one to intersect, merge, count, complement, and shuffle genomic
 intervals from multiple files in widely-used genomic file formats such as BAM,
 BED, GFF/GTF, VCF.")
-    (license license:gpl2)))
+    (license license:expat)))
 
 ;; Later releases of bedtools produce files with more columns than
 ;; what Ribotaper expects.