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branch staging updated (b6f946f -> b3b5714)
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From: |
guix-commits |
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Subject: |
branch staging updated (b6f946f -> b3b5714) |
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Date: |
Mon, 9 Mar 2020 17:08:03 -0400 (EDT) |
mbakke pushed a change to branch staging
in repository guix.
from b6f946f Merge branch 'master' into staging
add 1d24cc6 scripts: Show disk-space warning when under the min of the
thresholds.
add 70b7466 gnu: python-tables: Do not detect CPU features.
add 538c1a0 gnu: python-tables: Use later hdf5 version.
add c777ecb gnu: Add python-pathspec.
add 5f603fa gnu: python-black: Update to 19.10b0.
add cc2c285 gnu: Add python-pytest-black.
add 2ceff35 gnu: Add python-get-version.
add 053ab82 gnu: Add python-legacy-api-wrap.
add 858e642 gnu: python-scanpy: Update to 1.4.5.1.
add fecd325 gnu: python-aiohttp: Update to 3.6.2.
add 744f445 gnu: fmt: Use HTTPS and git-fetch.
add 8be782c gnu: fmt: Update to 6.1.2.
add 6d26ee3 gnu: Add soci.
add 83a483a gnu: Update python-scikit-learn to 0.22.1.
add be01767 gnu: r-lava: Update to 1.6.7.
add 3648859 gnu: r-flextable: Update to 0.5.9.
add 099adcf gnu: r-fs: Update to 1.3.2.
add 858d5d7 gnu: r-bookdown: Update to 0.18.
add bafedbc gnu: Add r-isoband.
add 87aa4d6 gnu: r-ggplot2: Update to 3.3.0.
add dd386dd gnu: r-modeltools: Update to 0.2-23.
add 6448c2e gnu: libgit2-glib: Update to 0.99.0.1.
add 8c6aae4 gnu: libgit2-glib: Adjust inputs.
add 5358950 gnu: gitg: Remove redundant input.
add 7154f5e gnu: python-pygit2: Update to 1.1.0.
add a9838ee gnu: libvirt-glib: Update to 3.0.0.
add 63db190 gnu: tracker: Update to 2.3.2.
add 852fa60 gnu: tracker-miners: Update to 2.3.2.
add 59d4c8c gnu: Add gnome-boxes.
add 462ca0b gnu: dovecot: Update to 2.3.10.
add 5424e68 gnu: carla: Partially fix start-up.
add 522ec70 gnu: Order module imports in (gnu packages audio).
add 366c2c8 gnu: fmt: Fix home page.
add 1ab58a3 gnu: carla: Fix start-up.
add 87bf568 Do not record store file name in cpp.scm.
add a125397 gnu: mercurial: Update to 5.3.1.
add a009a3e gnu: ungoogled-chromium: Increase max-silent-time.
add 5d01cc3 gnu: linux-libre@4.19: Update to 4.19.108.
add c2f41cb gnu: linux-libre: Update to 5.4.24.
add 1d3c6a3 gnu: wxmaxima: Update to 20.02.4.
add 895e6e8 doc: Fix build of German Cookbook translation.
add 64df141 gnu: gkrellm: Update to 2.3.11.
add ed2d015 gnu: hplip: Update to 3.20.2.
add d748843 gnu: knot: Update to 2.9.3.
add 2588693 gnu: rhythmbox: Don't use NAME in source URI.
add eda580c gnu: rhythmbox: Update to 3.4.4.
add 99aa7a2 gnu: bluefish: Don't use NAME in source URI.
add 290fe81 gnu: bluefish: Update to 2.2.11.
add fc10386 gnu: zimg: Update to 2.9.3.
add 1d7be59 gnu: re2c: Use HTTPS home page.
add 898dc49 gnu: ytalk: Use HTTPS home page.
add c61bfa0 gnu: xerces-c: Use HTTPS home page.
add a4fdde4 gnu: jq: Use HTTPS home page.
add b2ce10e gnu: yasm: Use HTTPS home page.
add 789c024 gnu: akonadi: Rename patch to fix guix lint warning about
patch filename size.
add 374540f gnu: sdl-pango: Rename patch to fix guix lint warning about
patch filename size.
add adca988 gnu: unicode-cldr-common: Fix spelling of "information".
add 5b309c6 gnu: ksystemlog: Fix spelling of "occurring".
add 92f4583 gnu: r-d3network: Fix typo "This package".
add 52c7331 gnu: rust-named-pipe-0.4: Fix spelling of "asynchronous"
add 5fb3c00 gnu: go-golang.org-x-sync-errgroup: Fix spelling of
"cancellation".
add af5c4eff gnu: sbcl-iolib: Fix build to refer to its subpackages
properly.
add 0bc557f gnu: cl-dbus: Remove unneeded inputs.
add ece22a2 gnu: fmt: Switch back to url-fetch.
add 0bbf14c gnu: xfce4-clipman-plugin: Don't use NAME in source URI.
add 3a5557a gnu: xfce4-clipman-plugin: Update to 1.4.4.
add beecf81 gnu: xfce4-weather-plugin: Update to 0.10.1.
add c0dc417 gnu: spice: Update to 0.14.3.
add 6a0d1bd gnu: librecad: Use HTTPS home page.
add cc31d17 gnu: emacs-ffap-rfc-space: Use HTTPS home page.
add 14a5146 gnu: python-execnet: Use HTTPS home page.
add 5969598 gnu: openblas: Use HTTPS home page.
add f23365f gnu: instantmusic: Update home page.
add a15b452 gnu: raincat: Update home page.
add a809d63 gnu: java-openchart2: Use HTTPS home page.
add b93a0c1 gnu: java-junit: Use HTTPS home page.
add c901060 gnu: java-testng: Use HTTPS home page.
add 4d1ddb5 gnu: java-log4j-1.2-api: Use HTTPS home page.
add c82ddf3 gnu: java-joda-convert: Use HTTPS home page.
add 4f236f8 gnu: Use HTTPS for commons.apache.org home pages.
add 4c8b874 gnu: ppp: Update to 2.4.8-1.8d45443 [fixes CVE-2020-8597].
add e7ba60d gnu: unbound: Update to 1.10.0.
add e4a9f13 gnu: ntp: Use HTTPS in metadata URIs
add db34ab7 gnu: ntp: Update to 4.2.8p14 [fixes Sec 3610, Sec 3596, Sec
3592].
add 1d57075 gnu: scm: Update to 5f3.
add 5cecf3f gnu: s6-linux-utils: Update to 2.5.1.2.
add 82853fb gnu: s6-networking: Update to 2.3.1.2.
add 072102f gnu: s6-portable-utils: Update to 2.2.2.2.
add 322ea25 gnu: s6-rc: Update to 0.5.1.2.
add 262d6ed gnu: next: Fix build with SBCL 2.0.2.
add 880a316 gnu: anki: Fix mpv audio playback
add 9eed0a7 fd: Install bash completion properly.
add 3b7c644 gnu: r-vsn: Add r-knitr.
add 56bf00b gnu: r-viridis: Add r-knitr.
add f0aaa44 gnu: r-yamss: Update to 1.12.1.
add a2512e4 gnu: r-xcms: Update to 3.8.2.
add bf3722f gnu: r-depecher: Update to 1.2.2.
add 6713327 gnu: r-multiassayexperiment: Update to 1.12.4.
add c363722 import/cran: Add vignette builder to native inputs.
add 06fc188 gnu: r-ggrepel: Add r-knitr.
add d56553e gnu: r-methylkit: Add r-knitr.
add 491ce4f gnu: r-heatmaply: Add r-knitr.
add c68c7e2 gnu: r-insight: Update to 0.8.2.
add 15d3ac7 gnu: r-mosaic: Add r-knitr.
add 4882fcd gnu: r-pscl: Update to 1.5.5.
add a97c648 gnu: r-covr: Update to 3.5.0.
add d854583 gnu: r-lifecycle: Update to 0.2.0.
add 667f799 gnu: r-survival: Update to 3.1-11.
add 1c9e3e9 gnu: r-dplyr: Update to 0.8.5.
add f61b980 gnu: emacs-relint: Update to 1.15.
add 2519e4c gnu: emacs-xr: Update to 1.17.
add 8ab060b gnu: guile: Add 2.2.7.
add 24a4a63 gnu: eudev: Add variant with corrected Btrfs rules.
add 9eb456b gnu: ccache: Update to 3.7.7.
add 74ff08e gnu: ccache: Fix indentation
add d9476a3 gnu: woff2: Update to 1.0.2
add 83ac7cb gnu: brotli: Remove package
add be3908f gnu: QEMU: Fix CVE-2020-8608.
add 5fdc5b2 services: nfs: Run rpc.mountd in foreground.
add e2ca10a gnu: python-umap-learn: Fix build.
add 1eb3b2b gnu: Add emacs-org-journal.
add 6434f9b gnu: Reword and extend descriptions for some KDE packages.
add dc30cc0 gnu: r-atacseqqc: Update to 1.10.3.
add 7b2acf1 gnu: r-rapidjsonr: Update to 1.2.0.
add c32897b gnu: r-robust: Update to 0.5-0.0.
add 5d52d10 store: Add set-current-target procedure.
add 9a2f99f gexp: Default to current target.
add 1a30351 gnu: guile-next: Update to 3.0.1.
add 9ef37e8 system: Export 'operating-system' missing fields.
add f6713b5 services: certbot: Add server option.
add 1d91680 gnu: beep: Update to 1.4.9.
add e5059c9 gnu: beep: Remove dependency on GCC 8.
add 30acf2f gnu: Add font-opendyslexic.
add d0ca79e gnu: Add perl-attribute-util.
add 3d33ca2 gnu: Add perl-config-inifiles.
add d6d0e10 gnu: guile-next: Revert to 3.0.0.
add 46a864e gnu: taxtastic: Update to 0.8.11.
add 3f68f76 gnu: Add jack-select.
add 830eac9 gnu: ngless: Update to 1.1.0.
add f2a6483 gnu: python-xyz: Add python-distlib.
add 6e79208 gnu: python-xyz: Add python-filelock.
add 94d57ba gnu: python-virtualenv: Update to 20.0.8.
add 67d21e2 gnu: guix-data-service: Update to 0.0.1-18.18eb9df.
add d8ab68b services: guix-data-service: Allow passing extra options.
add af96c1e services: cuirass: Allow passing extra command line options.
add fec7f57 gnu: r-ggrepel: Update to 0.8.2.
add bcbcd17 gnu: r-vcd: Update to 1.4-6.
add 207ba86 gnu: r-quantmod: Update to 0.4-16.
add ea20989 gnu: r-rcppannoy: Update to 0.0.16.
add 103de43 gnu: r-umap: Update to 0.2.5.0.
add c3b6d61 gnu: r-desolve: Update to 1.28.
add 478af02 doc: Use an https link for Contributor Covenant.
add 698a344 gnu: emacs-sly: Update to 20200228.
add 6dfc981 gnu: Add sycamore.
add b657466 gnu: Update python-statsmodels to 0.11.1.
add 61daf2d gnu: Add nyancat.
add fb29d7d gnu: Add vim-asyncrun.
add c0f6446 gnu: Fix build of python-velocyto.
add b4e1ca0 gnu: python-semver: Fix build.
add 4960c03 gnu: Add perl-math-vecstat.
add 9147d12 gnu: proj: Update to 6.3.1.
add 3cf0a5d gnu: gdal: Update to 3.0.4.
add e8906d8 gnu: spatialite-gui: Add missing input.
add 133de9a gnu: Add readosm.
add 0ccc138 gnu: Add spatialite-tools.
add df0bb50 download: Remove misbehaving kvin.lv mirror.
add bead506 gnu: s6-linux-init: Update to 1.0.4.0.
add 633c32f gnu: s6: Update to 2.9.0.1.
add 7ae397a gnu: claws-mail: Update to 3.17.5.
add d4e8859 gnu: xfburn: Update to 0.6.2.
add 0babcd9 gnu: xfce4-power-manager: Don't use NAME in source URI.
add 8a34536 gnu: xfce4-power-manager: Update to 1.7.0.
add 17dea2e gnu: idris: Use HTTPS home page.
add b385174 gnu: plotutils: Use HTTPS home page.
add ef75264 gnu: ding: Use HTTPS home page.
add 80fafdb gnu: speedcrunch: Use HTTPS home page.
add a0087cf gnu: mit-krb5: Use HTTPS home page.
add cf56610 gnu: tcsh: Use HTTPS home page.
add 4227a73 gnu: libostree: Update to 2020.2.
add 1fad0b8 gnu: libinput: Update to 1.15.3.
add c3bde0b gnu: libseccomp: Update to 2.4.3.
add 3a83862 gnu: man-db: Update to 2.9.1.
add 940f9c7 gnu: perl-datetime: Update to 1.52.
add 2317f33 gnu: perl-datetime-format-strptime: Update to 1.77.
add 0e591da gnu: perl-xs-object-magic: Update to 0.05.
add e4e44f2 gnu: perl-timedate: Update to 2.32.
add 99e8ce5 gnu: spice-protocol: Update to 0.14.1.
add 9d7a356 gnu: perl-catalyst-devel: Update to 1.40.
add a0093a7 gnu: youtube-dl: Update to 2020.03.08.
add f49b8c1 gnu: python-sphinxcontrib-applehelp: Update to 1.0.2.
add ccac511 gnu: python-sphinxcontrib-devhelp: Update to 1.0.2.
add 25b576a gnu: python-sphinxcontrib-htmlhelp: Update to 1.0.3.
add 99533be gnu: python-sphinxcontrib-qthelp: Update to 1.0.3.
add 11be157 gnu: python-sphinxcontrib-serializinghtml: Update to 1.1.4.
add 18d5964 gnu: python-sphinxcontrib-websupport: Update to 1.2.0.
add 51f30d4 Revert "gnu: libinput: Update to 1.15.3."
new b3b5714 Merge branch 'master' into staging
The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "add" were already present in the repository and have only
been added to this reference.
Summary of changes:
doc/contributing.texi | 2 +-
doc/guix.texi | 14 ++
gnu/local.mk | 10 +-
gnu/packages/admin.scm | 4 +-
gnu/packages/assembly.scm | 2 +-
gnu/packages/audio.scm | 61 +++--
gnu/packages/bioconductor.scm | 24 +-
gnu/packages/bioinformatics.scm | 90 ++++---
gnu/packages/ccache.scm | 23 +-
gnu/packages/chromium.scm | 4 +-
gnu/packages/compression.scm | 47 +---
gnu/packages/cpp.scm | 2 +-
gnu/packages/cran.scm | 102 +++++---
gnu/packages/crates-io.scm | 4 +-
gnu/packages/cups.scm | 6 +-
gnu/packages/databases.scm | 35 +++
gnu/packages/dictionaries.scm | 2 +-
gnu/packages/dns.scm | 8 +-
gnu/packages/education.scm | 6 +-
gnu/packages/emacs-xyz.scm | 43 +++-
gnu/packages/engineering.scm | 2 +-
gnu/packages/fonts.scm | 38 ++-
gnu/packages/fontutils.scm | 65 +++--
gnu/packages/geo.scm | 64 ++++-
gnu/packages/gkrellm.scm | 7 +-
gnu/packages/gnome.scm | 153 ++++++++----
gnu/packages/golang.scm | 2 +-
gnu/packages/guile.scm | 18 +-
gnu/packages/haskell-apps.scm | 2 +-
gnu/packages/idris.scm | 2 +-
gnu/packages/image.scm | 4 +-
gnu/packages/java.scm | 30 +--
gnu/packages/kde-multimedia.scm | 4 +-
gnu/packages/kde-pim.scm | 55 +++--
gnu/packages/kde-systemtools.scm | 12 +-
gnu/packages/kerberos.scm | 2 +-
gnu/packages/linux.scm | 35 ++-
gnu/packages/lisp-xyz.scm | 101 ++++++--
gnu/packages/machine-learning.scm | 10 +-
gnu/packages/mail.scm | 8 +-
gnu/packages/man.scm | 4 +-
gnu/packages/maths.scm | 24 +-
gnu/packages/messaging.scm | 2 +-
gnu/packages/music.scm | 60 ++++-
gnu/packages/ntp.scm | 8 +-
gnu/packages/package-management.scm | 4 +-
...i-Revert-Make-installation-properly-relo.patch} | 0
gnu/packages/patches/anki-mpv-args.patch | 42 ++++
.../patches/guile-finalization-crash.patch | 61 -----
gnu/packages/patches/libseccomp-open-aarch64.patch | 27 ---
gnu/packages/patches/qemu-CVE-2020-8608.patch | 269 +++++++++++++++++++++
...ngo-fix-explicit-SDLPango_CopyFTBitmapTo.patch} | 0
gnu/packages/patches/spice-fix-test-armhf.patch | 19 --
gnu/packages/patches/woff2-libbrotli.patch | 84 -------
gnu/packages/perl.scm | 93 ++++++-
gnu/packages/plotutils.scm | 2 +-
gnu/packages/pretty-print.scm | 12 +-
gnu/packages/python-web.scm | 6 +-
gnu/packages/python-xyz.scm | 241 +++++++++++++++---
gnu/packages/re2c.scm | 2 +-
gnu/packages/rust-apps.scm | 7 +-
gnu/packages/samba.scm | 88 +++----
gnu/packages/scheme.scm | 4 +-
gnu/packages/sdl.scm | 2 +-
gnu/packages/shells.scm | 2 +-
gnu/packages/skarnet.scm | 26 +-
gnu/packages/sphinx.scm | 26 +-
gnu/packages/spice.scm | 11 +-
gnu/packages/statistics.scm | 33 +--
gnu/packages/terminals.scm | 8 +-
gnu/packages/toys.scm | 36 +++
gnu/packages/unicode.scm | 2 +-
gnu/packages/version-control.scm | 7 +-
gnu/packages/video.scm | 4 +-
gnu/packages/vim.scm | 25 ++
gnu/packages/virtualization.scm | 5 +-
gnu/packages/web-browsers.scm | 12 +-
gnu/packages/web.scm | 27 +--
gnu/packages/xfce.scm | 24 +-
gnu/packages/xml.scm | 2 +-
gnu/services/base.scm | 6 +-
gnu/services/certbot.scm | 12 +-
gnu/services/cuirass.scm | 13 +-
gnu/services/guix.scm | 15 +-
gnu/services/nfs.scm | 1 +
gnu/system.scm | 8 +
guix/download.scm | 1 -
guix/gexp.scm | 91 ++++---
guix/import/cran.scm | 9 +-
guix/scripts.scm | 2 +-
guix/store.scm | 8 +-
po/doc/local.mk | 4 +-
tests/gexp.scm | 50 ++++
93 files changed, 1788 insertions(+), 846 deletions(-)
rename
gnu/packages/patches/{akonadi-Revert-Make-installation-properly-relocatabl.patch
=> akonadi-Revert-Make-installation-properly-relo.patch} (100%)
create mode 100644 gnu/packages/patches/anki-mpv-args.patch
delete mode 100644 gnu/packages/patches/guile-finalization-crash.patch
delete mode 100644 gnu/packages/patches/libseccomp-open-aarch64.patch
create mode 100644 gnu/packages/patches/qemu-CVE-2020-8608.patch
rename
gnu/packages/patches/{sdl-pango-fix-explicit-SDLPango_CopyFTBitmapToSurface.patch
=> sdl-pango-fix-explicit-SDLPango_CopyFTBitmapTo.patch} (100%)
delete mode 100644 gnu/packages/patches/spice-fix-test-armhf.patch
delete mode 100644 gnu/packages/patches/woff2-libbrotli.patch
- branch staging updated (b6f946f -> b3b5714),
guix-commits <=