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12/17: gnu: Use HTTPS for mdc-berlin.de home pages.
From: |
guix-commits |
Subject: |
12/17: gnu: Use HTTPS for mdc-berlin.de home pages. |
Date: |
Thu, 16 Jul 2020 14:13:33 -0400 (EDT) |
nckx pushed a commit to branch master
in repository guix.
commit fe39c701952733cf19650898feaa78ad4337a599
Author: Tobias Geerinckx-Rice <me@tobias.gr>
AuthorDate: Thu Jul 16 18:56:27 2020 +0200
gnu: Use HTTPS for mdc-berlin.de home pages.
* gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata,
pigx-rnaseq)
(pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS.
---
gnu/packages/bioinformatics.scm | 14 +++++++-------
1 file changed, 7 insertions(+), 7 deletions(-)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 4255df0..8a6be59 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -8415,7 +8415,7 @@ reference point and sorted by a user defined feature.")
("r-seqpattern" ,r-seqpattern)))
(native-inputs
`(("r-knitr" ,r-knitr)))
- (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
+ (home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Summary, annotation and visualization of genomic data")
(description
"This package provides a package for summary and annotation of genomic
@@ -8448,7 +8448,7 @@ genomic intervals. In addition, it can use BAM or BigWig
files as input.")
(arguments `(#:substitutable? #f))
(native-inputs
`(("r-knitr" ,r-knitr)))
- (home-page "http://bioinformatics.mdc-berlin.de/genomation/")
+ (home-page "https://bioinformatics.mdc-berlin.de/genomation/")
(synopsis "Experimental data for use with the genomation package")
(description
"This package contains experimental genetic data for use with the
@@ -12952,7 +12952,7 @@ once. This package provides tools to perform Drop-seq
analyses.")
("ghc-pandoc-citeproc" ,ghc-pandoc-citeproc)
("python-wrapper" ,python-wrapper)
("python-pyyaml" ,python-pyyaml)))
- (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for RNA sequencing experiments")
(description "PiGX RNAseq is an analysis pipeline for preprocessing and
reporting for RNA sequencing experiments. It is easy to use and produces high
@@ -13021,7 +13021,7 @@ expression report comparing samples in an easily
configurable manner.")
("kentutils" ,kentutils)))
(native-inputs
`(("python-pytest" ,python-pytest)))
- (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for ChIP sequencing experiments")
(description "PiGX ChIPseq is an analysis pipeline for preprocessing, peak
calling and reporting for ChIP sequencing experiments. It is easy to use and
@@ -13083,7 +13083,7 @@ in an easily configurable manner.")
("trim-galore" ,trim-galore)
("cutadapt" ,cutadapt)
("samtools" ,samtools)))
- (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Bisulfite sequencing pipeline from fastq to methylation
reports")
(description "PiGx BSseq is a data processing pipeline for raw fastq read
data of bisulfite experiments; it produces reports on aggregate methylation
@@ -13147,7 +13147,7 @@ methylation and segmentation.")
("r-singlecellexperiment" ,r-singlecellexperiment)
("r-stringr" ,r-stringr)
("r-yaml" ,r-yaml)))
- (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipeline for single-cell RNA sequencing experiments")
(description "PiGX scRNAseq is an analysis pipeline for preprocessing and
quality control for single cell RNA sequencing experiments. The inputs are
@@ -13176,7 +13176,7 @@ based methods.")
("pigx-chipseq" ,pigx-chipseq)
("pigx-rnaseq" ,pigx-rnaseq)
("pigx-scrnaseq" ,pigx-scrnaseq)))
- (home-page "http://bioinformatics.mdc-berlin.de/pigx/")
+ (home-page "https://bioinformatics.mdc-berlin.de/pigx/")
(synopsis "Analysis pipelines for genomics")
(description "PiGx is a collection of genomics pipelines. It includes the
following pipelines:
- 05/17: gnu: Update Haskell Wiki URIs., (continued)
- 05/17: gnu: Update Haskell Wiki URIs., guix-commits, 2020/07/16
- 07/17: gnu: Use HTTPS for www.yesodweb.com., guix-commits, 2020/07/16
- 08/17: gnu: ghc-pandoc-types: Use HTTPS home page., guix-commits, 2020/07/16
- 09/17: gnu: Use HTTPS for igraph.org., guix-commits, 2020/07/16
- 11/17: gnu: Use HTTPS for biojava.org home pages., guix-commits, 2020/07/16
- 13/17: gnu: libyaml: Use HTTPS., guix-commits, 2020/07/16
- 14/17: gnu: java-xmlunit: Use HTTPS home page., guix-commits, 2020/07/16
- 17/17: guix-install.sh: Make sure /etc/profile is sourced., guix-commits, 2020/07/16
- 06/17: gnu: Use HTTPS for github.com (and subdomains) home pages., guix-commits, 2020/07/16
- 10/17: gnu: jack@0.125.0: Update URIs., guix-commits, 2020/07/16
- 12/17: gnu: Use HTTPS for mdc-berlin.de home pages.,
guix-commits <=
- 15/17: gnu: kyotocabinet: Use HTTPS., guix-commits, 2020/07/16
- 16/17: guix-install.sh: Suggest running gpg as root., guix-commits, 2020/07/16